PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G266200.1.p
Common NamePRUPE_ppa004451mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 510aa    MW: 55278.1 Da    PI: 6.4477
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G266200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.21e-39146206262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s 
  Prupe.3G266200.1.p 146 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 206
                         7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-31143203IPR003851Zinc finger, Dof-type
PfamPF027014.0E-32148204IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.975150204IPR003851Zinc finger, Dof-type
PROSITE patternPS013610152188IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSEAKDPAIK LFGKTIPVPE VPLSSGESVG APEPDPSSGT LVEDTVDQDH ASSSNSSPEV  60
NTNRDREEKE VNNHKDTSGE KPMQTKQEDG IPPLSSEEVT NPDTASRVGV NPKSPVEKEN  120
ATVKNLKTEE EQSETSNSQE KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC  180
QRYWTAGGTM RNVPVGAGRR KNKNSASHYR HITVSEAMPN AQTDVLNGVH HPSVKSNGTV  240
LTFCGDAPLC ESMASVLHLA DKNIQNGTHN GFQKPEGLRI PASYGSGVNG DDHSNRSTVT  300
DSNSKDEACK TGSQEQVMQS YQGFPPQIPC FPGAPWPYPW NSAQWSSPVT PPAFCPPGFP  360
MPYYPAAAYW GCAVQGAWNI PWLPPPSSPN HSAPSSGPNS PTLGKHSRDE STVKQNNSEE  420
EEAPKEKSAE RCLWIPKTLR IDDPGEAARS SIWATLGIKN DKADSLSGGG LFKAFQPKGD  480
KKNHLTEASP VLQANPAALS RSLNFQESS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.29071e-144fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G266200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215254.10.0cyclic dof factor 2
TrEMBLM5X4K30.0M5X4K3_PRUPE; Uncharacterized protein
STRINGEMJ164530.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.27e-98cycling DOF factor 2