PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G252600.1.p | ||||||||
Common Name | PRUPE_ppa007243mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 377aa MW: 41407.6 Da PI: 7.2393 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.7 | 1.2e-31 | 55 | 196 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.. 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ ++ +++ ++ ++ s + ++s+ ++ Prupe.3G252600.1.p 55 FGGKDRHSKVCTVKGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDAAKHEIDELPPLPLPPSGNFglNHPSLVLTSSHGVQTha 145 689*************************************************************888884444322222222221111122 PP TCP 89 ........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + n ++ r k+++ ar+ t+e+ + Prupe.3G252600.1.p 146 haqlshdngegpsggiaqarshfwS------------------TNSDAIWRGKSKEIARDTTNEEEEEN 196 2222222211122222222222220..................12222333444444555444443333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 30.966 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.7E-28 | 57 | 195 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MIKSHNGADL QEAAGNSSRD DQANKFSTKA NDLSRPSTPW LRLKDPRIVR VSRAFGGKDR 60 HSKVCTVKGL RDRRVRLSVP TAIQLYDLQE RLGLNQPSKV VDWLLDAAKH EIDELPPLPL 120 PPSGNFGLNH PSLVLTSSHG VQTHAHAQLS HDNGEGPSGG IAQARSHFWS TNSDAIWRGK 180 SKEIARDTTN EEEEENQKDI STGSDQKEEG TVDGNSSSNN FLTRISTNHP FFPGLVNNAM 240 PYAYHNWDHN QPSNFPLSQL GSHGFPSQTA DLHNFINVVS LPSTLSLSTT QSYFPSHNAA 300 AAAEIDPRQF NHMHMLSSSS TSQNLLPNSL SPTLYPNSQT LRAPHLSMMT KLVRSSNNTT 360 GSDHHQPNTD QESPSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.1670 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G252600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215550.1 | 0.0 | transcription factor TCP13 | ||||
TrEMBL | M5WST0 | 0.0 | M5WST0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16749 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 5e-43 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G252600.1.p |
Entrez Gene | 18782233 |