PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G249600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 275aa    MW: 31377.2 Da    PI: 8.1172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G249600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-181764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ll ++v+++G g+W+ +a++ g++R++k+c++rw +yl
  Prupe.3G249600.1.p 17 KGPWTPEEDKLLNEYVNLYGEGRWSCVAKCAGLNRSGKSCRLRWVNYL 64
                        79********************************************97 PP
2Myb_DNA-binding506.7e-1670114147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Prupe.3G249600.1.p  70 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNFWRTH 114
                         6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7461264IPR017930Myb domain
SuperFamilySSF466892.4E-3114111IPR009057Homeodomain-like
SMARTSM007174.2E-151666IPR001005SANT/Myb domain
PfamPF002492.7E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-241871IPR009057Homeodomain-like
CDDcd001672.30E-111964No hitNo description
PROSITE profilePS5129424.3565119IPR017930Myb domain
SMARTSM007174.8E-1469117IPR001005SANT/Myb domain
PfamPF002498.2E-1470114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2472118IPR009057Homeodomain-like
CDDcd001671.31E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVTMMGWGFA EQQGWRKGPW TPEEDKLLNE YVNLYGEGRW SCVAKCAGLN RSGKSCRLRW  60
VNYLRPGLKR GHITPQEEGI IIELHALWGN KWSTIARYLP GRTDNEIKNF WRTHFKKKEK  120
CTQKQEKRKA QILLAKQQQQ LQEDQNLKIR ATPQSEASQG ENINMTTDHE AQARQENNMD  180
LISSSYPNLE GDQYCLPALM NQGSVGSWAD ILGEEGLYMG RLWNLDDEHV NGRMDRNTSL  240
SQCNKSAMQN QAAVTAFSSG GDHSYTFYNG GYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25171187107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G249600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416007.10.0myb-related protein 305
TrEMBLA0A251Q5C70.0A0A251Q5C7_PRUPE; Uncharacterized protein
STRINGXP_008230410.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-69myb domain protein 121