PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G249300.2.p | ||||||||
Common Name | PRUPE_ppa010249mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 272aa MW: 30838 Da PI: 8.656 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.4 | 1.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss Prupe.3G249300.2.p 9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 95.2 | 1.1e-31 | 75 | 173 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 y++++ + +e + + ++ e+ kL ++ie Lqr++Rh+ GedLesLsl+eLq+Le qLe++lk+iR++Kn+l++e+i+el kk+k+lqe+n Prupe.3G249300.2.p 75 YAEQQLTTDSEPQGSCWSLEYPKLAARIEVLQRKLRHFTGEDLESLSLRELQNLELQLETALKRIRTRKNQLMHESISELHKKQKALQEQN 165 567788888999999**************************************************************************** PP K-box 92 kaLrkkle 99 ++L kkl+ Prupe.3G249300.2.p 166 NSLAKKLK 173 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.001 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.45E-43 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 1.24E-33 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-27 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.451 | 88 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGRGKVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFST KGKLFEYSSD 60 SSMESILERY DQYSYAEQQL TTDSEPQGSC WSLEYPKLAA RIEVLQRKLR HFTGEDLESL 120 SLRELQNLEL QLETALKRIR TRKNQLMHES ISELHKKQKA LQEQNNSLAK KLKLKENENM 180 LEVEHDGQGR QVEQHQSNQA AHNSSTLLLM PPPPPQPPST PALLASLTIG GGIQARGGME 240 DGDDNDGRTQ TRPPTTTNTL MPMWMYRHFN E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G249300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP347546 | 0.0 | KP347546.1 Prunus pseudocerasus cauliflower A-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020415441.1 | 0.0 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | D7SMN6 | 1e-103 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A251Q550 | 0.0 | A0A251Q550_PRUPE; Uncharacterized protein | ||||
STRING | XP_008230294.1 | 1e-176 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-72 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G249300.2.p |
Entrez Gene | 18784509 |
Publications ? help Back to Top | |||
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