PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G240200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 420aa MW: 46879.2 Da PI: 8.3391 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.4 | 4.3e-41 | 131 | 280 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...ea 75 + kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl+++ +aik+l s +s+s c +a Prupe.3G240200.1.p 131 PMKKDRHSKIFTAQGLRDRRVRLSINVARQFFDLQDLLGFDKASKTLEWLLTKSRRAIKQLGTRnkhltcststgrskSLTSSSGCdddDA 221 679**********************************************************888899998887777665555566653222 PP TCP 76 esssssasnsssg....kaaksaa.kskksqksaasalnlak.esrakarararertrekmri 132 +s+ ++++ + +++ + k+k ++++++sa+ + +srakarararertrek + Prupe.3G240200.1.p 222 DSDTNEVE----NvasrEKEVMLMmKKKMKESESESANVYGTkDSRAKARARARERTREKLMC 280 22222222....1334444444443444444444444444446****************9764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-42 | 132 | 277 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.606 | 133 | 191 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.111 | 260 | 277 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MFSSCSSNIN STSVSPFQPY FPLSSSNYHP PPPPPPSFPC VNQEACSGDI FLHHNIQGYP 60 ISGQFPLHNN ALMAPPLPQS LTHLGVSSNT VPPSINADDH HPYHNYYGAI NNDNIFPHFL 120 HSSREDIVAP PMKKDRHSKI FTAQGLRDRR VRLSINVARQ FFDLQDLLGF DKASKTLEWL 180 LTKSRRAIKQ LGTRNKHLTC STSTGRSKSL TSSSGCDDDD ADSDTNEVEN VASREKEVML 240 MMKKKMKESE SESANVYGTK DSRAKARARA RERTREKLMC TTGSRPQMLN QLKLFNELDH 300 HQSNNNCKTM SSSSAKANIG DHPENQELGS LLANQLAHHH EDDPSVHVIK RNKLKQYSSV 360 YSNYNQQKYL NVVSAENTDQ SSNSHIQFPN AFQNWDTNGA FPCPNIHCAI TSINLSTGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-15 | 138 | 191 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-15 | 138 | 191 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G240200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216681.2 | 0.0 | transcription factor DICHOTOMA | ||||
Refseq | XP_021815722.1 | 0.0 | transcription factor DICHOTOMA-like | ||||
TrEMBL | A0A251Q5Z3 | 0.0 | A0A251Q5Z3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17880 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 2e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G240200.1.p |