PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G240000.1.p
Common NamePRUPE_ppa026046mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 315aa    MW: 36361.3 Da    PI: 8.065
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G240000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.71.2e-122068155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+ykGV   + +grW A+I++      ++r++lg+f  +eeAaka++ a  k++g
  Prupe.3G240000.1.p 20 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNAEEEAAKAYDIASIKFRG 68
                        78****9888.8*********3.....5*********************999987 PP
2B397.96.6e-31152254198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+kv tpsdv++++r+v+pk++ae+h     +  +e  +++ l +ed++g++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD+v F++
  Prupe.3G240000.1.p 152 FEKVATPSDVGRLNRMVIPKQHAEKHfplhlS--EElcKGVLLNFEDREGKVWRLRYCYWSSSQSYVLTKGWTRFVKEKKLKAGDVVRFER 240
                         89***************************652..44448899************************************************9 PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                         ++ +e+++++  + 
  Prupe.3G240000.1.p 241 SRGEEKKMFIDCRP 254
                         98899989888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-242075No hitNo description
SuperFamilySSF541711.24E-162077IPR016177DNA-binding domain
PfamPF008475.4E-82068IPR001471AP2/ERF domain
PROSITE profilePS5103219.7962176IPR001471AP2/ERF domain
SMARTSM003809.3E-252182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-192177IPR001471AP2/ERF domain
PRINTSPR003674.1E-52233IPR001471AP2/ERF domain
PRINTSPR003674.1E-54258IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.1E-40146256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-31148254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-29150246No hitNo description
PROSITE profilePS5086314.339152255IPR003340B3 DNA binding domain
SMARTSM010193.0E-25152255IPR003340B3 DNA binding domain
PfamPF023621.5E-28152255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDVLNESTSE AANSNKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN AEEEAAKAYD  60
IASIKFRGLE TITNFNQNQL KPYMDGDHET LFLQSHSKAE IVDMLRKHSY TNELEMYKLK  120
LFNAGDDDAA RKRIKCHVNL MEGYDHQREW LFEKVATPSD VGRLNRMVIP KQHAEKHFPL  180
HLSEELCKGV LLNFEDREGK VWRLRYCYWS SSQSYVLTKG WTRFVKEKKL KAGDVVRFER  240
SRGEEKKMFI DCRPRNVEVS GLGDMASRVE VEEPLSRVQE DDGVVRLFGV NIVETCSCIV  300
DNNMCWRLGA RISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4814925611118DNA-binding protein RAV1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G240000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216476.20.0AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotQ9C6M51e-103RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLM5XF160.0M5XF16_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ176750.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-105RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]