PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G218500.3.p
Common NamePRUPE_ppa019198mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 723aa    MW: 79179.5 Da    PI: 5.6363
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G218500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2059114156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Prupe.3G218500.3.p  59 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                         688999***********************************************999 PP
2START216.41e-672494701206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         e+a +a++el+++a+ +ep+W++s     +  n+de++++f++        ++ ea+r+s+vv+m++ +lve+l+d++ qW++ +     +
  Prupe.3G218500.3.p 249 EIAVAAMEELIRMAQMGEPLWMTSLdgntTVFNEDEYIRTFPRVAPkpsnhFKCEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsR 338
                         57899********************88777789********99777999999**************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tlev+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d  +++p       ++++pSg+li++++ng+s
  Prupe.3G218500.3.p 339 AMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHIDGTWAVVDVSLDTLRPNPA---PRSCQRRPSGCLIQEMPNGYS 426
                         ******************************************************************4...455789*************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtwvehvd+++r +h+l+++lv+sg a+gak+wvatl+rqce+
  Prupe.3G218500.3.p 427 KVTWVEHVDVDERGVHNLYKQLVNSGNAFGAKRWVATLDRQCER 470
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-2339114IPR009057Homeodomain-like
SuperFamilySSF466896.68E-2042116IPR009057Homeodomain-like
PROSITE profilePS5007116.95756116IPR001356Homeobox domain
SMARTSM003894.8E-2057120IPR001356Homeobox domain
PfamPF000464.0E-1859114IPR001356Homeobox domain
CDDcd000862.44E-1959117No hitNo description
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PROSITE profilePS5084842.711240473IPR002913START domain
SuperFamilySSF559616.39E-36241472No hitNo description
CDDcd088751.40E-123244469No hitNo description
SMARTSM002341.2E-61249470IPR002913START domain
PfamPF018523.9E-57249470IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-6318469IPR023393START-like domain
SuperFamilySSF559611.59E-24489714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MFQPNLMEAG HLHPLDMAQN TSESDIARIR EDDFDSATKS GSDNPEGGSG DDQDPRPKKK  60
RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH  120
ENTQLRNENE KLRADNMRYR EALGSASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR  180
ISAIAAKYVG KPVGNYPLLS SPVPSRSPLD LGVGSFGGQP GMAGEMYGGG DLLRSISGPN  240
EADKPLIIEI AVAAMEELIR MAQMGEPLWM TSLDGNTTVF NEDEYIRTFP RVAPKPSNHF  300
KCEASRESAV VIMNHINLVE ILMDVNQWST VFSGIVSRAM TLEVLSTGVA GNYNGALQVM  360
TAEFQVPSPL VPTRESYYVR YCKQHIDGTW AVVDVSLDTL RPNPAPRSCQ RRPSGCLIQE  420
MPNGYSKVTW VEHVDVDERG VHNLYKQLVN SGNAFGAKRW VATLDRQCER LASALASNIP  480
TGDVGVITNQ EGRKSMLKLA ERMVISFCAG VSASTTHTWT TLSGTGADDV RVMTRKSVDD  540
PGRPPGIVLS AATSFWLPVP PKRVFEFLRD ENSRNEWDIL SNGGIVQEMA HIANGRDTGN  600
CVSLLRSANS SQSNMLILQE SCTDQTASFV IYAPVDIVAM NVVLNGSDPD YVALLPSGFA  660
ILPDGGGMGD SGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIACTV ERIKAALSCD  720
TA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G218500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416501.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A251Q3T10.0A0A251Q3T1_PRUPE; Uncharacterized protein
STRINGXP_008230079.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2