PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G218500.1.p
Common NamePRUPE_ppa019198mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 757aa    MW: 82420.2 Da    PI: 5.7508
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G218500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2091146156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Prupe.3G218500.1.p  91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146
                         688999***********************************************999 PP
2START216.21.1e-672815021206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         e+a +a++el+++a+ +ep+W++s     +  n+de++++f++        ++ ea+r+s+vv+m++ +lve+l+d++ qW++ +     +
  Prupe.3G218500.1.p 281 EIAVAAMEELIRMAQMGEPLWMTSLdgntTVFNEDEYIRTFPRVAPkpsnhFKCEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsR 370
                         57899********************88777789********99777999999**************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tlev+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d  +++p       ++++pSg+li++++ng+s
  Prupe.3G218500.1.p 371 AMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHIDGTWAVVDVSLDTLRPNPA---PRSCQRRPSGCLIQEMPNGYS 458
                         ******************************************************************4...455789*************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtwvehvd+++r +h+l+++lv+sg a+gak+wvatl+rqce+
  Prupe.3G218500.1.p 459 KVTWVEHVDVDERGVHNLYKQLVNSGNAFGAKRWVATLDRQCER 502
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-2371146IPR009057Homeodomain-like
SuperFamilySSF466897.1E-2074148IPR009057Homeodomain-like
PROSITE profilePS5007116.95788148IPR001356Homeobox domain
SMARTSM003894.8E-2089152IPR001356Homeobox domain
PfamPF000464.3E-1891146IPR001356Homeobox domain
CDDcd000862.67E-1991149No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PROSITE profilePS5084842.711272505IPR002913START domain
SuperFamilySSF559616.87E-36273504No hitNo description
CDDcd088754.15E-123276501No hitNo description
PfamPF018524.2E-57281502IPR002913START domain
SMARTSM002341.2E-61281502IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-6350501IPR023393START-like domain
SuperFamilySSF559611.58E-25521748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MPAGLMIPAR NMPSMIGSNG NISGFGSSSG LTLGQPNLME AGHLHPLDMA QNTSESDIAR  60
IREDDFDSAT KSGSDNPEGG SGDDQDPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR  120
KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGSASC  180
PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVGNYPL LSSPVPSRSP  240
LDLGVGSFGG QPGMAGEMYG GGDLLRSISG PNEADKPLII EIAVAAMEEL IRMAQMGEPL  300
WMTSLDGNTT VFNEDEYIRT FPRVAPKPSN HFKCEASRES AVVIMNHINL VEILMDVNQW  360
STVFSGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHIDG  420
TWAVVDVSLD TLRPNPAPRS CQRRPSGCLI QEMPNGYSKV TWVEHVDVDE RGVHNLYKQL  480
VNSGNAFGAK RWVATLDRQC ERLASALASN IPTGDVGVIT NQEGRKSMLK LAERMVISFC  540
AGVSASTTHT WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL  600
RDENSRNEWD ILSNGGIVQE MAHIANGRDT GNCVSLLRVN SANSSQSNML ILQESCTDQT  660
ASFVIYAPVD IVAMNVVLNG SDPDYVALLP SGFAILPDGG GMGDSGSGGS LLTVAFQILV  720
DSVPTAKLSL GSVATVNNLI ACTVERIKAA LSCDTA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G218500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217584.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_020416500.10.0homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLM5XB960.0M5XB96_PRUPE; Uncharacterized protein
STRINGEMJ187830.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2