PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G216600.1.p
Common NamePRUPE_ppa017451mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 528aa    MW: 56892 Da    PI: 5.985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G216600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26e-163885148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed +l ++vk++G g+W+++ +  g+ R++k+c++rw ++l
  Prupe.3G216600.1.p 38 KGPWTAAEDGILMEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 85
                        79******************************************9986 PP
2Myb_DNA-binding44.34e-1491134146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g+ +++E+ l++++++++G++ W++ a+ ++ gRt++++k++w++
  Prupe.3G216600.1.p  91 KGSLSPDEERLIIELHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 134
                         57789*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-233088IPR009057Homeodomain-like
PROSITE profilePS5129415.8543385IPR017930Myb domain
SuperFamilySSF466892.7E-2935132IPR009057Homeodomain-like
SMARTSM007175.4E-123787IPR001005SANT/Myb domain
PfamPF002492.5E-143885IPR001005SANT/Myb domain
CDDcd001673.98E-104085No hitNo description
PROSITE profilePS5129424.686140IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2389139IPR009057Homeodomain-like
SMARTSM007179.4E-1590138IPR001005SANT/Myb domain
PfamPF002492.5E-1391134IPR001005SANT/Myb domain
CDDcd001674.59E-1195134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MMLNSSGVDG VHEAEAAAQR GGSHHNHHQQ HQQRGLKKGP WTAAEDGILM EYVKKHGEGN  60
WNAVQKNSGL ARCGKSCRLR WANHLRPNLK KGSLSPDEER LIIELHAKFG NKWARMASQL  120
PGRTDNEIKN YWNTRIKRRQ RAGLPVYPHD LQPEAAAAAF HHHQMRHSSS SSSSASSFSS  180
LLSNSQPLKP STYSPAQLSL YDHITTFSSS SDHHNNHTNN FHRNAASLFS NPITQFNGNG  240
GVFAMPFGSS SSSALFNQSH NIPNPNPFGS SSAAPPPLQH QYNSDGGFGG YNNLSLSSII  300
MGPPSYDSTA GLVAGSNAEL PSNQTRQSIH GDEAPMGASG NTNEDDHYEI APVPSKGNSG  360
LLDDVLAEAH NISNKRLKSE DSSSGVSGKE KGLVVVEEES NEEEEDDTVQ VESTLKNSGD  420
NSAENQRDDS SSPSSIDMKQ SEDPLDEMDD DLLSLLNFSS TVPAVSETSW YLAECMSNSG  480
SSASENVGLD TQQNAPLTLT SVKTTAAAPE VQRTLGACYW NNMPGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30361395107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G216600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020415663.10.0transcription factor MYB108
TrEMBLA0A251Q3P60.0A0A251Q3P6_PRUPE; Uncharacterized protein
STRINGEMJ184730.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-74myb domain protein 101