PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G201900.2.p | ||||||||
Common Name | PRUPE_ppa003702mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 556aa MW: 62383.7 Da PI: 6.9641 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 451.9 | 4.1e-138 | 179 | 549 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+++L+ cA+av+++dl laq+++ +l++++s +g+p+qRl ay++e+L ar a+s+s++ykal+++e + sse l+++++++ev+P++ Prupe.3G201900.2.p 179 LKQVLIFCAKAVADNDLLLAQWMMDELRQMVSVSGEPIQRLGAYLLEGLVARRASSGSNIYKALRCKEPA---SSELLSYMHILYEVCPYF 266 5799*****************************************************************9...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s + l+ +g+rL+k+Ae ++vpfef++ Prupe.3G201900.2.p 267 KFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWLTLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLNIVGKRLSKLAELFKVPFEFHA 357 **********************************************************888789999************************ PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a + +++l++L v+pgEala n++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rf+e+l+yy+a+f+s+ Prupe.3G201900.2.p 358 -AAMSGCEVQLKHLGVRPGEALAMNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFVETLNYYTAMFESI 447 .89999************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +++lpr+++eri+vE+++l+re+vn++aceg er+erhe l+kWr r+++aGF+p+pls+ +++++k+ll ++++ yr++e++g+l+lgW Prupe.3G201900.2.p 448 DVTLPRDHKERINVEQHCLAREVVNIIACEGVERVERHELLGKWRLRFTMAGFTPYPLSSLVNATIKTLLDNYSD-KYRLQERDGALYLGW 537 **************************************************************************5.5************** PP GRAS 363 kdrpLvsvSaWr 374 k+r Lv+ +aW+ Prupe.3G201900.2.p 538 KNRDLVASCAWK 549 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.883 | 153 | 530 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-135 | 179 | 549 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MQASKHHRSS GMSNRLCYQP VQEVEAYCLP RFQTLDPQVH YNNESSQSTV FSAQNFHIKY 60 CTLESSAANG SYTVYNSPST VNFSPNGSPM SQQDSHSYPP PDQYHSPDQN YSSPISGSCI 120 TDDATDFKYK LKQLETVMLG PDSNILDNYC STFQNGTSNT LPETDSWGQI MDSISKRDLK 180 QVLIFCAKAV ADNDLLLAQW MMDELRQMVS VSGEPIQRLG AYLLEGLVAR RASSGSNIYK 240 ALRCKEPASS ELLSYMHILY EVCPYFKFGY MSANGAIAEA MKDENRVHII DFQIGQGSQW 300 LTLIQAFAAR PGGPPHIRIT GIDDSMSAYA RGGGLNIVGK RLSKLAELFK VPFEFHAAAM 360 SGCEVQLKHL GVRPGEALAM NFAFMLHHMP DESVSTQNHR DRLLRLVKSL SPKVVTLVEQ 420 ESNTNTAAFF PRFVETLNYY TAMFESIDVT LPRDHKERIN VEQHCLAREV VNIIACEGVE 480 RVERHELLGK WRLRFTMAGF TPYPLSSLVN ATIKTLLDNY SDKYRLQERD GALYLGWKNR 540 DLVASCAWKC KPSTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-63 | 181 | 549 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.13769 | 1e-166 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G201900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215518.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_020414483.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_020414485.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_020414486.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_020414487.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | M5WSC8 | 0.0 | M5WSC8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16717 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G201900.2.p |
Entrez Gene | 18784027 |
Publications ? help Back to Top | |||
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