PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G197300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-YB | ||||||||
Protein Properties | Length: 138aa MW: 15048.9 Da PI: 5.8276 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 140.7 | 3.8e-44 | 25 | 111 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqdrflPianvsrimkk+lPanakiskdaketv fvt+easdkcqrekrktin+ddllwa++tl fe+y+eplkvyl+kyre Prupe.3G197300.1.p 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETV---------FVTGEASDKCQREKRKTINSDDLLWAMTTLRFEEYMEPLKVYLHKYRE 106 89******************************98.........9*********************************************** PP NF-YB 93 legek 97 legek Prupe.3G197300.1.p 107 LEGEK 111 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.7E-39 | 19 | 121 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.83E-31 | 27 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.6E-16 | 30 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.9E-12 | 49 | 67 | No hit | No description |
PRINTS | PR00615 | 1.9E-12 | 68 | 86 | No hit | No description |
PRINTS | PR00615 | 1.9E-12 | 87 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MADSDNDSGG NNDGSHAQSR ELSAREQDRF LPIANVSRIM KKALPANAKI SKDAKETVFV 60 TGEASDKCQR EKRKTINSDD LLWAMTTLRF EEYMEPLKVY LHKYRELEGE KTIMGGRDKD 120 SAGGGGGGLP VEVAVTV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-38 | 14 | 106 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G197300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021805914.1 | 4e-74 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | O23310 | 1e-62 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A251Q2N9 | 4e-97 | A0A251Q2N9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229927.1 | 2e-71 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-58 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G197300.1.p |
Publications ? help Back to Top | |||
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