PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G194500.2.p | ||||||||
Common Name | PRUPE_ppa006303mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CO-like | ||||||||
Protein Properties | Length: 419aa MW: 45098.3 Da PI: 5.7041 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.2 | 5.2e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Prupe.3G194500.2.p 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP | |||||||
2 | zf-B_box | 24.2 | 6.8e-08 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C++ ++ lC++C +H g H++++ Prupe.3G194500.2.p 46 LLCERCNSQPALVRCTEERVSLCQNCDWMGH-GtstsasaHKRQT 89 57*****************************.5578888888765 PP | |||||||
3 | CCT | 59.4 | 1.3e-20 | 359 | 402 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k RkF+K++rY+sRKa+A+ R+RvKGrF k+ Prupe.3G194500.2.p 359 RSNAVMRYKEKKKARKFDKRVRYASRKARADVRKRVKGRFIKAG 402 899*************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.684 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.70E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 3.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.001 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.16E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 1.5 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 8.2E-16 | 359 | 401 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.289 | 359 | 401 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC 60 TEERVSLCQN CDWMGHGTST SASAHKRQTL NCYSGCPSAS ELSSIWSFVL DLPAAGESAC 120 EQEMGLMSIA ENSTGSAWSP PESNAKQNAS GTVEVNGVRS VDKSGVLVGS SSVPELNPAT 180 HVVGQQAGSE NATLPKLFCH GTKGPAIPED DDLYDDFDMD EMDLNLENYE ELFGVSLNHS 240 EELFKNGGID SLFGAKNMSR GNSNYQDVGA AEGSSVGLVN ALQPACSNAA SADSVMSTKT 300 DPIICFPAKQ AQSNLSFSGV TGESSAGDCQ DCGASSMLLM GEPPWCPPCP ESSMQSANRS 360 NAVMRYKEKK KARKFDKRVR YASRKARADV RKRVKGRFIK AGEAYDYDPL NQARTRSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G194500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF189171 | 5e-98 | KF189171.1 Frangula alnus subsp. alnus clone Contig18771 polymorphic genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215444.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Refseq | XP_020414970.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Refseq | XP_020414971.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-158 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | M5X538 | 0.0 | M5X538_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16643 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-117 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G194500.2.p |
Entrez Gene | 18783553 |