PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G186200.2.p | ||||||||
Common Name | PRUPE_ppa001344mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 847aa MW: 97144.4 Da PI: 6.8767 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85 | 1.2e-26 | 89 | 191 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +r+ ++t+Cka+++vk++ dgkw+++ Prupe.3G186200.2.p 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSynrprarqnkqdPENATGRRSCSKTDCKASMHVKRRPDGKWVIH 179 5******************************************99999999988776554555559999********************** PP FAR1 80 kleleHnHelap 91 ++++eHnHel p Prupe.3G186200.2.p 180 NFVKEHNHELLP 191 *********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-24 | 89 | 191 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-33 | 289 | 381 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.889 | 569 | 605 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-6 | 580 | 607 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 2.0E-4 | 581 | 603 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MDIDLRLPSG EHDKEDEEPH GIDNMLDHEE KLQNGDIENG NIVDVRDEVH AEDGGDLNSP 60 TADMVVFKED TNLEPLFGME FASHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYDKSYNRPR ARQNKQDPEN ATGRRSCSKT DCKASMHVKR RPDGKWVIHN 180 FVKEHNHELL PAQAVSEQTR KMYAAMARQF AEYKNVVGLK NDPKNPFDKG RNLALEAGDL 240 KILLDFFTQM QNMNSNFFYA IDLGDDQRLK SLFWVDAKSR HDYINFSDVV SFDTTYIRNK 300 YKMPLVLFVG VNQHYQFVLL GCALVSDEST TTFSWLMQTW LKAMGGQAPK VIITDHDKSI 360 KSVISEVFPN AYHCFCLWHI LGKVSENLGH VIKRHENFMA KFEKCIHRSS TNEEFEKRWW 420 KILEKFELKD DEWTQSLYED RKQWVPTYMR DVCLAGMSAV QRSESVNSFF DKYVHKKTTV 480 QEFLKQYEAI LQDRYEEEAK ADSDTWNKQP TLRSPSPLEK SVSGVYTHAV FKKFQVEVLG 540 AVACHPKRER QDETTITFRV QDFEKNQDFI VTWNEMKTEV SCLCCLFEYK GYLCRHALIV 600 LQICGLSAIP AQYILKRWTK DVKSRHLVGE ESDHGLSRVQ KFNDLYQRAM KVIEEGSLSQ 660 ESYSVACRAL EEAFGNCVSV NNSSKSLIEA GTSSVTHGLL CIEDDSQNRS MGKTNKKKNP 720 TKKRKVNSEP DVMTVGAQDS LQQMDKLNPR AVTLDGYYGA QQSVQGMVQL NLMAPTRDNY 780 YGNQQTIQGL GQLNSIAPSH DGYYSAQQSM HGLMDFFRTA GGFTYGMRDD PNVRTAPLHD 840 DASRHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G186200.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007214930.2 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_020415030.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A251Q2F9 | 0.0 | A0A251Q2F9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16129 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G186200.2.p |
Entrez Gene | 18783794 |