PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G186000.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 735aa MW: 83923.7 Da PI: 7.7499 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.8 | 8.6e-24 | 101 | 187 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e+ ++ + + t+t+Cka+l++k+++dgkw+v+++ +eHnHe++p Prupe.3G186000.9.p 101 YYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESGTT---VNPRLCITKTDCKASLHIKRKDDGKWVVHSFIKEHNHEMCP 187 9*****************************************9888...5666789********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-21 | 101 | 187 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.4E-26 | 270 | 361 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MEIDLELPSC ERDKLVTGSD KDVNVVDVTD EKNVEEHVNS PTTSEHVKEA DGLDANQSAC 60 SLQAQDDAKN MGLNAVDEGK RVIQEPQNGL EFESKEEAYS YYREYARSVG FGITIKASRR 120 SKKSGKFIDI KIACSRFGSK RESGTTVNPR LCITKTDCKA SLHIKRKDDG KWVVHSFIKE 180 HNHEMCPDDF IYAISGRNKK PATVVCQKKG LQSALGQEDV RVMFEHFMCM QDEDPNFFYA 240 VDFDHEKRLR SVFWIDAKCR HDYSSFCDAV FFDTYYVRNN YRIPFVPIVG VNHHFQYILL 300 GCALMGEETI PAFVWLMQTW LKVVGGQAPR LIITDQDKYL KEAVADVFTD AYHCFCLWHV 360 LTRIPENVGF FIKENEIFME KFNKCIYRSW TVEQFEKKWW KLVDRFELRE NAWVHSLFED 420 RKKWVPTYMQ DSFMAGMSTK ERSGSITSFF DRHAILVLQV SGVSGIPSHY ILKRWTKDAK 480 VRCTVSDGPK RLNYRVQRFN DLCKLAVKLG EEGSLSPEAY HIAFQALEAA LKHCVDANNS 540 VRTVSEANMS ANHGFNDVEE VNPSSNMAKS SKKKKTYKKR KAQTEQDSGT IRLQDSCQQM 600 EQMKSRAHNR DNCYVPQQEL EGEHGSRSRG LDSYYGAQQS MQGMGQLNSI APISDGYYCN 660 QQATQGQLHS LPTRVGHYGT QQSMRGMGQL SFRSPTVQSC FDIQGNLQDM EQSAGSSHFH 720 GNASKRLHGK HQTQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G186000.9.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020415064.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_020415065.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Swissprot | Q3EBQ3 | 1e-161 | FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A251Q3B2 | 0.0 | A0A251Q3B2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229651.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32250.4 | 1e-151 | FAR1-related sequence 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G186000.9.p |
Publications ? help Back to Top | |||
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