PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.3G186000.7.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 733aa MW: 83666.5 Da PI: 7.8474

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G186000.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.6e-24	101	187	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e+ ++ + + t+t+Cka+l++k+++dgkw+v+++ +eHnHe++p Prupe.3G186000.7.p 101 YYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESGTT---VNPRLCITKTDCKASLHIKRKDDGKWVVHSFIKEHNHEMCP 187 9***************************************9888...5666789******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-21	101	187	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-26	270	361	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MEIDLELPSC ERDKLVTGSD KDVNVVDVTD EKNVEEHVNS PTTSEHVKEA DGLDANQSAC 60 SLQAQDDAKN MGLNAVDEGK RVIQEPQNGL EFESKEEAYS YYREYARSVG FGITIKASRR 120 SKKSGKFIDI KIACSRFGSK RESGTTVNPR LCITKTDCKA SLHIKRKDDG KWVVHSFIKE 180 HNHEMCPDDF IYAISGRNKK PATVVCQKKG LQSALGQEDV RVMFEHFMCM QDEDPNFFYA 240 VDFDHEKRLR SVFWIDAKCR HDYSSFCDAV FFDTYYVRNN YRIPFVPIVG VNHHFQYILL 300 GCALMGEETI PAFVWLMQTW LKVVGGQAPR LIITDQDKYL KEAVADVFTD AYHCFCLWHV 360 LTRIPENVGF FIKENEIFME KFNKCIYRSW TVEQFEKKWW KLVDRFELRE NAWVHSLFED 420 RKKWVPTYMQ DSFMAGMSTK ERSGSITSFF DRHAILVLQV SGVSGIPSHY ILKRWTKDAK 480 VRCTVSDGPK RLNYRVQRFN DLCKLAVKLG EEGSLSPEAY HIAFQALEAA LKHCVDANNS 540 VRTVSEANMS ANHGFNDVEE VNPSSNMAKS SKKKKTYKKR KAQTEQDSGT IRLQDSCQQM 600 MKSRAHNRDN CYVPQQELEG EHGSRSRGLD SYYGAQQSMQ GMGQLNSIAP ISDGYYCNQQ 660 ATQGQLHSLP TRVGHYGTQQ SMRGMGQLSF RSPTVQSCFD IQGNLQDMEQ SAGSSHFHGN 720 ASKRLHGKHQ TQ*

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MEIDLELPSC ERDKLVTGSD KDVNVVDVTD EKNVEEHVNS PTTSEHVKEA DGLDANQSAC  60
SLQAQDDAKN MGLNAVDEGK RVIQEPQNGL EFESKEEAYS YYREYARSVG FGITIKASRR  120
SKKSGKFIDI KIACSRFGSK RESGTTVNPR LCITKTDCKA SLHIKRKDDG KWVVHSFIKE  180
HNHEMCPDDF IYAISGRNKK PATVVCQKKG LQSALGQEDV RVMFEHFMCM QDEDPNFFYA  240
VDFDHEKRLR SVFWIDAKCR HDYSSFCDAV FFDTYYVRNN YRIPFVPIVG VNHHFQYILL  300
GCALMGEETI PAFVWLMQTW LKVVGGQAPR LIITDQDKYL KEAVADVFTD AYHCFCLWHV  360
LTRIPENVGF FIKENEIFME KFNKCIYRSW TVEQFEKKWW KLVDRFELRE NAWVHSLFED  420
RKKWVPTYMQ DSFMAGMSTK ERSGSITSFF DRHAILVLQV SGVSGIPSHY ILKRWTKDAK  480
VRCTVSDGPK RLNYRVQRFN DLCKLAVKLG EEGSLSPEAY HIAFQALEAA LKHCVDANNS  540
VRTVSEANMS ANHGFNDVEE VNPSSNMAKS SKKKKTYKKR KAQTEQDSGT IRLQDSCQQM  600
MKSRAHNRDN CYVPQQELEG EHGSRSRGLD SYYGAQQSMQ GMGQLNSIAP ISDGYYCNQQ  660
ATQGQLHSLP TRVGHYGTQQ SMRGMGQLSF RSPTVQSCFD IQGNLQDMEQ SAGSSHFHGN  720
ASKRLHGKHQ TQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G186000.7.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020415064.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_020415065.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_020415066.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X2
Refseq	XP_020415067.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X3
Swissprot	Q3EBQ3	1e-161	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A251Q289	0.0	A0A251Q289_PRUPE; Uncharacterized protein
STRING	XP_008229651.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	1e-151	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Prupe.3G186000.7.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]