PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G179800.1.p
Common NamePRUPE_ppa017228mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 553aa    MW: 60500.9 Da    PI: 7.1783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G179800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16351397455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Prupe.3G179800.1.p 351 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 397
                         6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-20344412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.152347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.72E-18350401No hitNo description
PfamPF000109.0E-14351397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-20351405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MNSCIPDWNF EADLPLTNQK KPMGPDHELV ELLWRNGQVV LHSQTHRKPC PNPPNEARQV  60
QKQDPQTIRV GGLYGNSSNL TQDEDTGSLI HYPLEDSFDK EFCSHFFSEL PSCDPIEIDK  120
PTKQFEEEKF AKFGASDTPH LVSTAPQPNV KSPAGMGYPA NPMPPPRYQY NNSTEQNQNL  180
VGLGKVVNFS TFATPGKGDR GSSRGKIGGK ESGNLTQAEV KECSVMTVGS SYVGSNQVLN  240
DFDVSRASSN CDGTTGLSVG PFYDNVQKMM PQNERGKTDT LDPTLTSSSG GSGSSFGRGG  300
KRSNVVNSNK RKGRDAEESE CQSEAAELES AAGNKSAQRS GSSRRSRAAE VHNLSERRRR  360
DRINEKMRAL QELIPHSNKT DKASMLDEAI EYLKSLQMQL QVMWMGSGMA PMMFPGMQHY  420
MSRMGMGMGM GVGMGPPALP SMHNPMHLPR VPLVDQCINV APATNQAVMC QAPVLNPVDY  480
HNQMQNPAFQ EQYARLMGFH HMQTMSQPMN MFRFGSQPMQ QNQMTAPTGI NSGPLGGGGT  540
ANDTLSGKMS FF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G179800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894150.0KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216256.20.0transcription factor PIF4 isoform X1
RefseqXP_020416274.10.0transcription factor PIF4 isoform X1
RefseqXP_020416275.10.0transcription factor PIF4 isoform X1
TrEMBLA0A251Q3230.0A0A251Q323_PRUPE; Uncharacterized protein
STRINGEMJ174550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.23e-54phytochrome interacting factor 4