PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G163300.1.p | ||||||||
Common Name | PRUPE_ppa020385mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 28211.4 Da PI: 6.0595 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 10 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd ll ++ + +G g W+ ++ + g++R++k+c++rw++y Prupe.3G163300.1.p 10 KGAWTKEEDALLSKCMENHGEGKWHEVPYKAGLNRCRKSCRLRWLNY 56 79********************************************9 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.3e-14 | 63 | 106 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E +l+++++k+lG++ W++Ia +++ gRt + +k++w++ Prupe.3G163300.1.p 63 RGEFTEDEVDLIIRLHKLLGNR-WALIAGRLP-GRTSNGVKNYWNT 106 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.513 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-27 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-13 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-14 | 10 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.63E-8 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 23.195 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-13 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-13 | 63 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.69E-9 | 65 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-21 | 65 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGGNNLDVKK GAWTKEEDAL LSKCMENHGE GKWHEVPYKA GLNRCRKSCR LRWLNYVKPN 60 IKRGEFTEDE VDLIIRLHKL LGNRWALIAG RLPGRTSNGV KNYWNTRRRT NSLLKTTTKE 120 KFQETIKPIV TRPQPRSFTK SSNCSSFEEP VLDHTQLEEN FSTPSQTSPS TRIGNDWWDT 180 FLDDKDATET ATGSGPGFDE ELLTSFWVDD DMPQSARTCI NFSEEELSIS DFSFNLDLWN 240 HSKEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-22 | 7 | 106 | 4 | 102 | B-MYB |
1h8a_C | 2e-22 | 5 | 109 | 22 | 125 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G163300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP772283 | 0.0 | KP772283.1 Prunus cerasifera MYB10.3 transcription factor (MYB10.3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216350.1 | 0.0 | transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 1e-57 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A0K1TPF1 | 0.0 | A0A0K1TPF1_9ROSA; MYB10.3 transcription factor | ||||
TrEMBL | M5WV61 | 0.0 | M5WV61_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17549 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 5e-60 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G163300.1.p |
Entrez Gene | 18784074 |
Publications ? help Back to Top | |||
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