PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G163000.1.p
Common NamePRUPE_ppa016711mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 228aa    MW: 26851.3 Da    PI: 8.9987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G163000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-141057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd+ll ++++  G g W+ ++ + g++R++k+c++rw +yl
  Prupe.3G163000.1.p 10 KGAWTREEDDLLRQCIENQGEGKWHQVPYKAGLNRCRKSCRLRWVNYL 57
                        79********************************************97 PP
2Myb_DNA-binding46.58.6e-1563106146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g + ++E +l+++++k+lG++ W++Iar+++ gRt++++k++w++
  Prupe.3G163000.1.p  63 KGEFAEDEVDLIIRLHKLLGNR-WSLIARRLP-GRTANNVKNYWNT 106
                         678899****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.916557IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-21660IPR009057Homeodomain-like
SuperFamilySSF466893.29E-277104IPR009057Homeodomain-like
SMARTSM007171.5E-12959IPR001005SANT/Myb domain
PfamPF002491.3E-131057IPR001005SANT/Myb domain
CDDcd001671.28E-71257No hitNo description
PROSITE profilePS5129422.51458112IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2161109IPR009057Homeodomain-like
SMARTSM007172.8E-1362110IPR001005SANT/Myb domain
PfamPF002492.5E-1363106IPR001005SANT/Myb domain
CDDcd001671.05E-865106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEGYDLSVRK GAWTREEDDL LRQCIENQGE GKWHQVPYKA GLNRCRKSCR LRWVNYLKPN  60
IKKGEFAEDE VDLIIRLHKL LGNRWSLIAR RLPGRTANNV KNYWNTRSRT DYCMKKIKDK  120
SQETIKTIIR PQPRRFTKSS NCLSFKEPIL DHTQRDWWET FLDDKDATER ATGSGLGLDE  180
ELLASFWVDD DMPQSTRKCI NFSEGLIRGD FSFSVDPWNH SNEEYRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21101067102B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Function -- GeneRIF ? help Back to Top
  1. Studies indicate that MYB10.1/2/3 MYB10.1 (ppa026640m), MYB10.2 (ppa016711m) and MYB10.3 (ppa020385m) forms a cluster on the same genomic fragment.
    [PMID: 24827911]
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G163000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3159040.0KP315904.1 Prunus persica cultivar Atropurpurea R2R3 MYB transcription factor (MYB10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216223.11e-169transcription factor MYB114
SwissprotQ9FNV96e-55MY113_ARATH; Transcription factor MYB113
TrEMBLM5WUC91e-168M5WUC9_PRUPE; Uncharacterized protein
STRINGEMJ174221e-169(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-57myb domain protein 113
Publications ? help Back to Top
  1. Rahim MA,Busatto N,Trainotti L
    Regulation of anthocyanin biosynthesis in peach fruits.
    Planta, 2014. 240(5): p. 913-29
    [PMID:24827911]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]