PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.3G154400.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 573aa MW: 67007.7 Da PI: 7.4556

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G154400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.1	1.3e-08	11	66	1	48
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.......t 48 ++Y+eY+++ GF +r++ s+k+ ++ + +++r+fvC egk ++++++ + Prupe.3G154400.1.p 11 NYYEEYGRQEGFWIRTRFSSKTrRHLDMVMSRQFVCAHEGKYAPKNTSqkaleenD 66 69***********99888884667889***********99988844443321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-6	11	65	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-12	185	237	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.94	383	419	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.4E-5	396	416	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MVFETMEEAR NYYEEYGRQE GFWIRTRFSS KTRRHLDMVM SRQFVCAHEG KYAPKNTSQK 60 ALEENDERDI NSHNHKPVTP ERRLKMKSNR VMPKAAKILT ETFHEENLPI SKVPSILGGP 120 QIGFNNRDCY NHLRNVQHRQ LDGGRSKLRI LNFFYAIQCD ENGRTTNFFW VDAQSRMAYH 180 YFGDVVTFDT TYRTNEYDMP FAPFTGVNHH LQSIQFGCAL LQDETEEFEE KWKELMKECE 240 LANDDWLNSL YDIHSSWVPV YNHNIFFAGM NTTGRSEGIN SFFDGFITPT TNLREFVVKY 300 EQALKRIMDR ESDEDFESEH RYRIVNEGEF LLKHASKFYT RNVFNKFKDE WSKVTLFKVE 360 EISCDDEYHA YLVKTKLGEH EEFVVKLNLQ TYKGMCECQN FEFVGILCRH LLKVFVRLDT 420 DTLLDHFILP RWRQEANKFR IIDFKSLVTN DGKEESEALR LSHMCHRATK LACIAASSNE 480 AYTTSMEAIN ELSKKLSDNF TQHATIPSSI TSDPCSTNID SSQLLLLDPN ISQTKGRKKD 540 NISGSKRIKS GIELAQNKKK RKVRRLVARY GE*

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MVFETMEEAR NYYEEYGRQE GFWIRTRFSS KTRRHLDMVM SRQFVCAHEG KYAPKNTSQK  60
ALEENDERDI NSHNHKPVTP ERRLKMKSNR VMPKAAKILT ETFHEENLPI SKVPSILGGP  120
QIGFNNRDCY NHLRNVQHRQ LDGGRSKLRI LNFFYAIQCD ENGRTTNFFW VDAQSRMAYH  180
YFGDVVTFDT TYRTNEYDMP FAPFTGVNHH LQSIQFGCAL LQDETEEFEE KWKELMKECE  240
LANDDWLNSL YDIHSSWVPV YNHNIFFAGM NTTGRSEGIN SFFDGFITPT TNLREFVVKY  300
EQALKRIMDR ESDEDFESEH RYRIVNEGEF LLKHASKFYT RNVFNKFKDE WSKVTLFKVE  360
EISCDDEYHA YLVKTKLGEH EEFVVKLNLQ TYKGMCECQN FEFVGILCRH LLKVFVRLDT  420
DTLLDHFILP RWRQEANKFR IIDFKSLVTN DGKEESEALR LSHMCHRATK LACIAASSNE  480
AYTTSMEAIN ELSKKLSDNF TQHATIPSSI TSDPCSTNID SSQLLLLDPN ISQTKGRKKD  540
NISGSKRIKS GIELAQNKKK RKVRRLVARY GE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	557	562	KKKRKV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G154400.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020412171.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_020417035.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A251Q0K8	0.0	A0A251Q0K8_PRUPE; Uncharacterized protein
STRING	EMJ18972	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF26425	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-40	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Prupe.3G154400.1.p