PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G127700.1.p | ||||||||
Common Name | PRUPE_ppa014599mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 542aa MW: 59173.7 Da PI: 6.5333 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.5 | 1.3e-27 | 233 | 287 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ Prupe.3G127700.1.p 233 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 287 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.152 | 230 | 289 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-18 | 231 | 290 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 231 | 290 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-26 | 233 | 287 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.3E-8 | 236 | 285 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MLILSPLRDG HHQLKEEKQL GGGGRDEGEV EGFDFNGGNS VGSAGLDFPE FSGGMGNLLD 60 SIDFDDLFIG IHDGDVLPDL EMDSEILDFS AHRDHGDEYY HNNAKTTSSK VEDQEEEEEE 120 EEEGKDRVRA AADSLTNATT TRNNQTYSSS SNTSTTTTSA TQDQDRDGGH EEIGSKGNCN 180 SNINNNISQI RASQHEQNQL LNQSSSPKES ADQKLARKSS STAQSKNSHG KRKVKVDWTP 240 ELHRRFVQAV EQLGVDKAVP SRILELMGID CLTRHNIASH LQKYRSHRKH LLAREAEAAS 300 WTQRRQMYGA ATVSGGGGGG GGGGGKSSRY DVMMMNSPNW LNAPTMGFPP IPSPTPPSMH 360 HHHHHQMIRP LHVWGHPSMD QSMMHMWPKH LPHNFPSPIP PPPPPAHAWP PPPPPPSDAS 420 YWHHPPPHHQ RVPNALTPGT PCFPRQLATA TQQRFPAPPV PGIPPHAMYK VDTGIAVPSP 480 QSGPHPLVDF HPSNESIDAA IGDVLSKPWL PLPLGLRPPA TDSVMVELQR QGIPKIPPSC 540 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-16 | 230 | 285 | 2 | 57 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G127700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209002 | 2e-51 | AC209002.1 Populus trichocarpa clone POP040-E22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020416310.1 | 0.0 | transcription activator GLK1 isoform X1 | ||||
TrEMBL | A0A251PZA3 | 0.0 | A0A251PZA3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22551 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 9e-71 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G127700.1.p |
Entrez Gene | 18787889 |