PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G126300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25907.4 Da PI: 8.5553 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.4 | 1.3e-34 | 14 | 105 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++r+kC ++Cvlapyfpa+++++f +vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv G +g ++ + +l++ k Prupe.3G126300.1.p 14 ACAACKHQRKKCHDGCVLAPYFPADRTREFLAVHKVFGVSNVTKMVKNANEANRRKVVDSLVWEALCRQKDPVLGPYGEYRMVFDELKRYK 104 7******************************************************************************999999999887 PP DUF260 92 a 92 + Prupe.3G126300.1.p 105 N 105 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.111 | 13 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-33 | 14 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MQRKNNGTPG TQPACAACKH QRKKCHDGCV LAPYFPADRT REFLAVHKVF GVSNVTKMVK 60 NANEANRRKV VDSLVWEALC RQKDPVLGPY GEYRMVFDEL KRYKNHEIQM VHPSQVQKGM 120 CFSKSLSDFV GWNCGGANGI SNHNINLGGY LHENENVIID SASYGYPSNC ELQSPENIIK 180 QAKLVDSVVL PLNQHQQRSI NNINQQYYLS GQLNQIISKP IEDTIWEGGT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-23 | 8 | 142 | 5 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-23 | 8 | 142 | 5 | 124 | LOB family transfactor Ramosa2.1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G126300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020415505.1 | 1e-174 | LOB domain-containing protein 2 | ||||
TrEMBL | A0A251PZB9 | 1e-173 | A0A251PZB9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229134.1 | 1e-158 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12722 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 7e-43 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G126300.1.p |