PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.3G124900.3.p

Common Name

PRUPE_ppa007094mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 383aa MW: 41280.9 Da PI: 6.9104

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G124900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117	2.4e-36	28	151	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasecea 75 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ + +++ Prupe.3G124900.3.p 28 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhpitgvaannaepdQ------SNP 112 79**************************************************************777777666554333321......122 PP TCP 76 esssssasnsssg................kaaksaakskksqksaasal 108 ++ ++ + ++ +++++++a++++ Prupe.3G124900.3.p 113 NE----------MviaggaeqtessgynfHQLQRQMGENNNNHQANNVS 151 22..........1222222222233344444444445555555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-30	28	147	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.754	30	88	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MGMKSAGGGG GGGGEIIQVQ GGHIVRSTGR KDRHSKVYTA KGPRDRRVRL SAHTAIQFYD 60 VQDRLGYDRP SKAVDWLIKK AKSSIDKLAE LPPWHPITGV AANNAEPDQS NPNEMVIAGG 120 AEQTESSGYN FHQLQRQMGE NNNNHQANNV SSFNIPPSLD SDTIADTMKS FFPTSSAATS 180 SINFQSYPPD HDLISRTTNL NPCQDLGLSL HSFQDQGLNI HHTHSQQSQG DTNHNNDQIQ 240 TLFAAGAGGS TVGFDTSYQR MVAWSNQNRG GDGGFVFNSH SQALPQQAYA HAQGGTLQSS 300 FSPSVSARAW NDSSIFGTQQ RTQQQQQQQP MIHHSSIFGT RFASDGGLPV FCIPTRIDAE 360 EADNGGVPDR PSSTSSPNST HH*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MGMKSAGGGG GGGGEIIQVQ GGHIVRSTGR KDRHSKVYTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKSSIDKLAE LPPWHPITGV AANNAEPDQS NPNEMVIAGG  120
AEQTESSGYN FHQLQRQMGE NNNNHQANNV SSFNIPPSLD SDTIADTMKS FFPTSSAATS  180
SINFQSYPPD HDLISRTTNL NPCQDLGLSL HSFQDQGLNI HHTHSQQSQG DTNHNNDQIQ  240
TLFAAGAGGS TVGFDTSYQR MVAWSNQNRG GDGGFVFNSH SQALPQQAYA HAQGGTLQSS  300
FSPSVSARAW NDSSIFGTQQ RTQQQQQQQP MIHHSSIFGT RFASDGGLPV FCIPTRIDAE  360
EADNGGVPDR PSSTSSPNST HH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-23	35	88	1	54	Putative transcription factor PCF6
5zkt_B	6e-23	35	88	1	54	Putative transcription factor PCF6
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269\|PubMed:25378179}.
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269\|PubMed:17307931}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G124900.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM501064	2e-75	KM501064.1 Malus domestica TCP domain-containing protein 4 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007211426.1	0.0	transcription factor TCP4
Refseq	XP_020416703.1	0.0	transcription factor TCP4
Swissprot	Q8LPR5	3e-73	TCP4_ARATH; Transcription factor TCP4
TrEMBL	M5X0N9	0.0	M5X0N9_PRUPE; Uncharacterized protein
STRING	EMJ12625	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	2e-61	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Link Out ? help Back to Top
Phytozome	Prupe.3G124900.3.p
Entrez Gene	18779362

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]