PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G124900.2.p | ||||||||
Common Name | PRUPE_ppa007094mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 383aa MW: 41280.9 Da PI: 6.9104 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117 | 2.4e-36 | 28 | 151 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasecea 75 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ + +++ Prupe.3G124900.2.p 28 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhpitgvaannaepdQ------SNP 112 79**************************************************************777777666554333321......122 PP TCP 76 esssssasnsssg................kaaksaakskksqksaasal 108 ++ ++ + ++ +++++++a++++ Prupe.3G124900.2.p 113 NE----------MviaggaeqtessgynfHQLQRQMGENNNNHQANNVS 151 22..........1222222222233344444444445555555555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-30 | 28 | 147 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.754 | 30 | 88 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MGMKSAGGGG GGGGEIIQVQ GGHIVRSTGR KDRHSKVYTA KGPRDRRVRL SAHTAIQFYD 60 VQDRLGYDRP SKAVDWLIKK AKSSIDKLAE LPPWHPITGV AANNAEPDQS NPNEMVIAGG 120 AEQTESSGYN FHQLQRQMGE NNNNHQANNV SSFNIPPSLD SDTIADTMKS FFPTSSAATS 180 SINFQSYPPD HDLISRTTNL NPCQDLGLSL HSFQDQGLNI HHTHSQQSQG DTNHNNDQIQ 240 TLFAAGAGGS TVGFDTSYQR MVAWSNQNRG GDGGFVFNSH SQALPQQAYA HAQGGTLQSS 300 FSPSVSARAW NDSSIFGTQQ RTQQQQQQQP MIHHSSIFGT RFASDGGLPV FCIPTRIDAE 360 EADNGGVPDR PSSTSSPNST HH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-23 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-23 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G124900.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM501064 | 2e-75 | KM501064.1 Malus domestica TCP domain-containing protein 4 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211426.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_020416703.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 3e-73 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | M5X0N9 | 0.0 | M5X0N9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12625 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-61 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G124900.2.p |
Entrez Gene | 18779362 |