PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G118000.3.p | ||||||||
Common Name | PRUPE_ppa009171mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 310aa MW: 34982.7 Da PI: 10.4007 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.5 | 1.1e-15 | 29 | 121 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W+++ + +Liea e++ +l+rg+l++++Weev++++ +r+ +qCk++ + l+k+yk +k++ ++ + + +s +p+f+ Prupe.3G118000.3.p 29 CWSEDATFTLIEAWGERHLSLNRGNLRQKHWEEVADAVnachvtaDNPRSRRTDVQCKNRVDTLKKKYKIEKARVSDSNGDYTSPWPFFSL 119 7******************************************976667789************************99999999*****98 PP trihelix 85 le 86 l+ Prupe.3G118000.3.p 120 LD 121 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-24 | 27 | 123 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MDFVAGSPSP VTAPRPNSKT ASVPVREDCW SEDATFTLIE AWGERHLSLN RGNLRQKHWE 60 EVADAVNACH VTADNPRSRR TDVQCKNRVD TLKKKYKIEK ARVSDSNGDY TSPWPFFSLL 120 DSLIGSKFPK PSPPLPRRST PSPPLPRRRP PSPPLQWTFP VARRSATVKR PAAAFFPAPG 180 DEPVLNQNLD FSAFAAVAAA AAAESEESER SPSRSSVGGS RMRDRDREVG CVELAMAIER 240 FAEIYERVEQ RKQRQMVELE KQRMQFAKDL EYHRMQLFME TTKHQLRKIK RAKRSSSSPG 300 RQLLIADEV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.6315 | 1e-162 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G118000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF213938 | 1e-121 | AF213938.1 Prunus dulcis proline-rich protein (PRP) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414344.1 | 0.0 | trihelix transcription factor ASIL2 isoform X2 | ||||
TrEMBL | A0A251PYY3 | 0.0 | A0A251PYY3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16940 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 1e-69 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G118000.3.p |
Entrez Gene | 18784213 |