PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G104100.1.p
Common NamePRUPE_ppa007768mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 360aa    MW: 40182.3 Da    PI: 8.6216
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G104100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.7e-1648107155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g
  Prupe.3G104100.1.p  48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAARAYDLAALKYWG 107
                         57*******************999955656446*************************98 PP
2AP251.23.1e-16150201155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Prupe.3G104100.1.p 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 201
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-1748116IPR016177DNA-binding domain
PfamPF008474.0E-1248107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1649115IPR001471AP2/ERF domain
SMARTSM003805.3E-2849121IPR001471AP2/ERF domain
PROSITE profilePS5103220.58749115IPR001471AP2/ERF domain
PRINTSPR003674.1E-65061IPR001471AP2/ERF domain
CDDcd000181.28E-23150211No hitNo description
SuperFamilySSF541711.05E-17150211IPR016177DNA-binding domain
PfamPF008475.6E-12150201IPR001471AP2/ERF domain
PROSITE profilePS5103218.334151209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17151210IPR001471AP2/ERF domain
SMARTSM003801.2E-24151215IPR001471AP2/ERF domain
PRINTSPR003674.1E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAKTSQQNQK NTASSNNSNT NNTNSTATTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQVYLGAYDD EEAAARAYDL AALKYWGQDT ILNFPLGTYP  120
EELKEMESQS KEEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAT AYDMAAIEYR GLNAVTNFDL SRYIKSLCPN NQNVPNNAQP NPNDDLVPMQ  240
NPNSKLGLGF IPNYHSSSSS ASESTVALSR PGNGASASSA LGLLLQSPKF KEMLERTSTS  300
STDCSSTLSV PDIPRRSFPD DIQTYFDCQD LNSYAEGDDI IFGDLHSFAS PVFHCELDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G104100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414381.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-126AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A251PYG00.0A0A251PYG0_PRUPE; Uncharacterized protein
STRINGEMJ168030.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-101ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]