PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G090500.1.p | ||||||||
Common Name | PRUPE_ppa001906mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 745aa MW: 86712 Da PI: 4.9762 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.9 | 6.3e-22 | 134 | 217 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++++w+v++++leHnH + Prupe.3G090500.1.p 134 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKDAN-----SRKKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 217 69*****************************************9988.....88999******************************77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-19 | 134 | 217 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.6E-28 | 339 | 432 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.507 | 626 | 662 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.6E-5 | 637 | 664 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MTGENTFSPS DQAFSANSNL HITIQEGSQN SEQLLENENN DLENDCEQLF EIEGNEPESE 60 RDDTSDQLFD IQSNDHENDG GDINEHLFEI EGNDHESSRD DRTIIDYQNG GSQEKAYPPP 120 VVGLEFDSYD DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKDAN 180 SRKKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDSGAKRKME 240 PTVDVEVRTI KLYRTPVVDA VGYGSSNSNE GETNNHVDRS KRLKLKNGDA RAIYKYFCRV 300 QLTDPNFFYV IDLNDEGYSR NVFWIDSRSR AAYNYFGDVV SFETTCLSNN YEIPLVAFVG 360 VNHHGQTILL GCGLLADETL ETYIWLFRAW LTCMSGRPPQ TIITNQCKAM QSALAEVFPR 420 AHHRLSSSHV MQSILENMGA IQEYEAFQMI LSRTVYDSIK VDEFELAWEH MIQRFGIRDH 480 EFIQTLYDDR EQWVPVYSKD TFFAVMPNFQ KGESTNPFFD GYVHQQTSLE EFLDVYDVVL 540 EKKRQEEARN DFESRELTPM LRTRCYYELQ LSKFYTKDVF IKFQDEVVMM SSCFSITQVH 600 TNGPIVTYMI KEREGEEIMR DNNRNFEVMY DKAGAEVRCM CSCFNLNGYL CRHALCILNY 660 NGVEEIPFQY ILSRWRKDFK RLYVPDLGSN NVDITNPVQW FDHLYRRAMQ VVQEGMISQD 720 HYMVSWQAFK ESLNKVRLVA DKHV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G090500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007217026.1 | 0.0 | protein FAR1-RELATED SEQUENCE 8 | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | M5XGN7 | 0.0 | M5XGN7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ18225 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G090500.1.p |
Entrez Gene | 18783617 |
Publications ? help Back to Top | |||
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