PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G090400.2.p | ||||||||
Common Name | PRUPE_ppa002952mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 619aa MW: 72216.7 Da PI: 8.7668 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.8 | 6.7e-22 | 11 | 94 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l++++ ++++w+v ++ leHnH l Prupe.3G090400.2.p 11 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRVLEVTLEHNHLL 94 69*****************************************9988.....99*********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.2E-19 | 11 | 94 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.8E-33 | 213 | 306 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.5E-4 | 494 | 532 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.891 | 500 | 536 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 511 | 538 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MEFESYDDAY NYYNCYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNRLR 60 KETRTGCPAM LRMRLVDSKR WRVLEVTLEH NHLLGAKIYK SIKKVGSGMK RKSQSSSDAE 120 KRTIKLYRAL VIDSGVDGTS NLNPTDIRNF PDHPNQLNLK KGDTQAIYNY LCRMQLTNPN 180 FFYLMDLNDD GRLRNVFWMD ARCRAACGYF ADVIYFDNTY LSNKYEIPLV AFVGINHHGQ 240 TVLLGCALLA GETTESYTWL FRAWLTCVSG QFPQTIITDR CKALQSAIAE VFPRCHHRFG 300 LSHIIKKVPE KLGGLRNYDA IRKALIKAVY ETLKVIEFEA AWGFMIQRFG VGDHEWLHSL 360 YEDRFRWAPV YLKETFFAGM SAARPGETLS PFFDRYVHKQ TPLKEFLDKY ELALQKKHKE 420 EALADIESRS SSPTLKTRCS FEFQLSKVYT REIFKNFQFE VEEMYSCFST TQLHVDGPII 480 IFLVKERVVV EGNRREIRDY EVLYNRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI 540 PSKYILSRWK KDFKRIYIPD HGSSNADDTD RMQWFNQLYR SALQIVEEGV ISLDHYKVAL 600 QAFEESLNRV HDVEDKHE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G090400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216973.2 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_020416629.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A251PXJ9 | 0.0 | A0A251PXJ9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ18172 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G090400.2.p |
Entrez Gene | 18781732 |
Publications ? help Back to Top | |||
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