PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G090300.2.p | ||||||||
Common Name | PRUPE_ppa002486mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 553aa MW: 63229.5 Da PI: 5.4244 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.7 | 1.7e-22 | 60 | 142 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+v+++eleHnH ++ Prupe.3G090300.2.p 60 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSNRWRVIEVELEHNHLIS 142 9***************99997.66779**************99888.....***********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-19 | 60 | 142 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-28 | 263 | 357 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MDEVSLNTEP AGDDDADEFE IEGDCAMTDF ISQTGIIQGE NPLPPVVGME FDSYEDVYYF 60 YNCYAKQQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMDSNRWRV IEVELEHNHL ISPASGKFYK SHKSVGVGTK RALQLDTAEE VQKIRLFRTV 180 IIDSEGNGSI DVDEGESGNR VDYSNQLKLK EGDAQAVQNY FSRLQLMDPN FFYVVDLNEK 240 GCLRNLFWAD ARTRVAYSYF CDIVAIDATC LENKFEVPLV SFIGVNHHGQ SVLLGCGLLA 300 SETVESYTWL FRAWLTCILG RPPQAIITSQ CRTLQTAISD VFPRASHCLC LSHIMQKFPE 360 NLGGLFEYEA IKESFSRAVY YSLRVEEFEA AWEDMVQRHG IRDHKWLQAL FDDRKRWVPV 420 YLKDIFLAGM SPVQPSEVVS SYFKEFLHKD TPLKEFLDKY DQALQTHHRL EALADLDSRN 480 SSYMLKSGCY FELQLSKVYT NDILRKFESE VEGMYSCFST SQLNPDGPVI THIVKEQTEV 540 DGNRREARTI SP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G090300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215010.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A251PXJ7 | 0.0 | A0A251PXJ7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16209 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G090300.2.p |
Entrez Gene | 18782368 |