PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G083400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 556aa    MW: 63642.5 Da    PI: 10.2475
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G083400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.8e-1423112399
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         k  +++d+ +++ l++p+kf+ ++g +   s  + l+ +sg +W+++l  rk  ++ +l kGW +F k   L+   ++vF ++g+s+f  +
  Prupe.3G083400.1.p  23 K-IISKDTCRQSKLRIPNKFLMKYGDD--LSNPIFLKLPSGSEWKIEL--RKWEDKAWLDKGWPKFSKFYSLDYSHSLVFGYEGKSKF--C 106
                         4.45778888899***********988..6677***************..77777899*************************99999..* PP

                         EEEE-S CS
                  B3  94 vkvfrk 99 
                         v++f++
  Prupe.3G083400.1.p 107 VRIFDR 112
                         ****98 PP
2B3512.7e-16219316199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+  +t+s++++s  ++lp +f   h   ++ ++s  ++++ ++gr+W + l+ ++ + +  +++GW +F+++n+Lk gD++vF l+++ +
  Prupe.3G083400.1.p 219 FIVPMTRSSTNRSF-VWLPSDFS-FHmtRLS-NNSGNVMFRVLDGRTWCLGLKCERAKPKARFQSGWFKFARDNNLKIGDVCVFVLVDDIR 306
                         56667777777666.*******8.5557444.45569***************999999999**************************9999 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                          ++ v +fr+
  Prupe.3G083400.1.p 307 LTFEVVIFRA 316
                         9999999987 PP
3B353.83.5e-17436515687
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +++++ + g l +  kf++eh +k +++k  +l+ ++gr+W v l   +++++   +++GW++Fv++n+L+ gD++vF l++ 
  Prupe.3G083400.1.p 436 LHPSYISAGYLHIGAKFIKEHLLK-RSHKNAILRVSDGRTWPVSL--GQQGKGiLRFQTGWRKFVQDNQLEIGDVCVFVLTNA 515
                         5677777888***********665.67889***************..555555599**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-2214113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-2014113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-1619111No hitNo description
PROSITE profilePS5086312.44920113IPR003340B3 DNA binding domain
SMARTSM010191.1E-1121113IPR003340B3 DNA binding domain
PfamPF023622.0E-1122113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18211317IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-19212317IPR015300DNA-binding pseudobarrel domain
CDDcd100177.97E-18217315No hitNo description
PROSITE profilePS5086313.014218317IPR003340B3 DNA binding domain
SMARTSM010192.3E-7219317IPR003340B3 DNA binding domain
PfamPF023624.8E-14219316IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-21424515IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-20425522IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-7431528IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717431528IPR003340B3 DNA binding domain
PfamPF023621.6E-15434517IPR003340B3 DNA binding domain
CDDcd100177.00E-16434526No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MASLHRKIHN RPTFSTNTPH FLKIISKDTC RQSKLRIPNK FLMKYGDDLS NPIFLKLPSG  60
SEWKIELRKW EDKAWLDKGW PKFSKFYSLD YSHSLVFGYE GKSKFCVRIF DRNFTEIAYP  120
LTTPDLKDTD EVDDSESEYD DDFSDDSESE SDFSDDSVEI LDKFLPRSRK SSSSGKSEFP  180
AKRHCGGTST TRRFIKRTRS AKFIALQRAK AFKSDKPSFI VPMTRSSTNR SFVWLPSDFS  240
FHMTRLSNNS GNVMFRVLDG RTWCLGLKCE RAKPKARFQS GWFKFARDNN LKIGDVCVFV  300
LVDDIRLTFE VVIFRATEAA NTLSPDVDGE QTMSEMEETD EDYDSVELLD YFPPCLKTRK  360
KSPIAPQPRK KNRTCSISTA ENNIRSVGGS SRSQKFLKRR PQVSRMMNPV TESGTDRALQ  420
RAKAFRSEYP SSTVVLHPSY ISAGYLHIGA KFIKEHLLKR SHKNAILRVS DGRTWPVSLG  480
QQGKGILRFQ TGWRKFVQDN QLEIGDVCVF VLTNAIKRLI DVVLFRATEA AKCTLSGEGH  540
RRRTISSSRK IKREA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G083400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243867.20.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A251Q0F70.0A0A251Q0F7_PRUPE; Uncharacterized protein
STRINGXP_008243867.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein