PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G078800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CPP | ||||||||
Protein Properties | Length: 781aa MW: 85724.5 Da PI: 6.5006 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.5 | 3.5e-15 | 511 | 549 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC++skClk+YCeCfaag++C ++C C +C Nk e Prupe.3G078800.3.p 511 CKRCNCRRSKCLKLYCECFAAGVYCVDSCACVNCYNKPE 549 89**********************************975 PP | |||||||
2 | TCR | 52.2 | 1.2e-16 | 597 | 635 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClk+YCeCf+a++ Cs+ C+Ce+CkN+ Prupe.3G078800.3.p 597 RHKRGCNCKKSKCLKRYCECFQAKVGCSSACRCEGCKNT 635 589***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.0E-15 | 509 | 550 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.241 | 510 | 637 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.3E-11 | 512 | 547 | IPR005172 | CRC domain |
SMART | SM01114 | 1.2E-16 | 597 | 638 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.9E-12 | 599 | 635 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 781 aa Download sequence Send to blast |
MDRTPEANRI AATKSSSISS SPAVQESPFS NFLSNLSPLN TATTASYTQT LLGTNLPTPP 60 VVFTSPHINL QRETSFLERD DIVEAGSEVY KECNTNIVQI QNPSFEEVQL CSPSGCVDEY 120 LADPVEVDST WSADLRSQRT NEVPRLLHSG FAPGEESNTE VCDIMFGSPE NEAVLLSDQA 180 EKNLPLSSLE MSQAAINQRD GKKTEELSRF IFEKVKESDV NACLVSRAQN CGENAAKLHR 240 AGCQYDEKNA SSQSREDSNE CKQRVQKGFV KEGGQNERGI RRHLQFEAAK AYKFTILGNS 300 ESPNSLTHDA TNSRSPSILT NLKSLASSHF DNRASSSLQD VSCDTLQFPS SPYESFTSAQ 360 IGVNSTTSAP IHSVIGLHLN RISRSTSLSS DIFSSKKSIG YLSMPEQMLE HGSNNIATNS 420 SSILTSAVSG KIYVHVASGQ QESQAVTEAN SFTFHSTDTM KPPCHSMLVD QETAPCEVGM 480 SASQETDEVE ELNQLSPKRK RRRDAYMSEG CKRCNCRRSK CLKLYCECFA AGVYCVDSCA 540 CVNCYNKPEF EDTVLDIRQQ IEARNPLAFT PKVVDNAIDS SPNFTEEQDL TTPSSARHKR 600 GCNCKKSKCL KRYCECFQAK VGCSSACRCE GCKNTFGVTP EPVYNRAKKW EAHPAEKLDN 660 VKGAIACIKA PASSSNSAKI PQAQLPSSQL QPSGAHYDIP YDDTPEILEE TSNPTKVVRA 720 SSPNQKRVSP PQSRSRLRER SPTGLRSGRK FILQAMPSFP PLTPHRNSKE GTNEIENDDK 780 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-17 | 512 | 641 | 12 | 126 | Protein lin-54 homolog |
5fd3_B | 1e-17 | 512 | 641 | 12 | 126 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 497 | 502 | KRKRRR |
2 | 498 | 502 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G078800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414498.1 | 0.0 | protein tesmin/TSO1-like CXC 3 isoform X7 | ||||
TrEMBL | A0A251PY97 | 0.0 | A0A251PY97_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17894 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 3e-60 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G078800.3.p |