PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G078800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CPP | ||||||||
Protein Properties | Length: 617aa MW: 67844.8 Da PI: 7.9672 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.9 | 2.6e-15 | 347 | 385 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC++skClk+YCeCfaag++C ++C C +C Nk e Prupe.3G078800.2.p 347 CKRCNCRRSKCLKLYCECFAAGVYCVDSCACVNCYNKPE 385 89**********************************975 PP | |||||||
2 | TCR | 52.6 | 8.9e-17 | 433 | 471 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClk+YCeCf+a++ Cs+ C+Ce+CkN+ Prupe.3G078800.2.p 433 RHKRGCNCKKSKCLKRYCECFQAKVGCSSACRCEGCKNT 471 589***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.0E-15 | 345 | 386 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.241 | 346 | 473 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.7E-11 | 348 | 383 | IPR005172 | CRC domain |
SMART | SM01114 | 1.2E-16 | 433 | 474 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.4E-12 | 435 | 471 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MFGSPENEAV LLSDQAEKNL PLSSLEMSQA AINQRDGKKT EELSRFIFEK VKESDVNACL 60 VSRAQNCGEN AAKLHRAGCQ YDEKNASSQS REDSNECKQR VQKGFVKEGG QNERGIRRHL 120 QFEAAKAYKF TILGNSESPN SLTHDATNSR SPSILTNLKS LASSHFDNRA SSSLQDVSCD 180 TLQFPSSPYE SFTSAQIGVN STTSAPIHSV IGLHLNRISR STSLSSDIFS SKKSIGYLSM 240 PEQMLEHGSN NIATNSSSIL TSAVSGKIYV HVASGQQESQ AVTEANSFTF HSTDTMKPPC 300 HSMLVDQETA PCEVGMSASQ ETDEVEELNQ LSPKRKRRRD AYMSEGCKRC NCRRSKCLKL 360 YCECFAAGVY CVDSCACVNC YNKPEFEDTV LDIRQQIEAR NPLAFTPKVV DNAIDSSPNF 420 TEEQDLTTPS SARHKRGCNC KKSKCLKRYC ECFQAKVGCS SACRCEGCKN TFGVTPEPVY 480 NRAKKWEAHP AEKLDNVKGA IACIKAPASS SNSAKIPQAQ LPSSQLQPSG AHYDIPYDDT 540 PEILEETSNP TKVVRASSPN QKRVSPPQSR SRLRERSPTG LRSGRKFILQ AMPSFPPLTP 600 HRNSKEGTNE IENDDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-18 | 348 | 477 | 12 | 126 | Protein lin-54 homolog |
5fd3_B | 8e-18 | 348 | 477 | 12 | 126 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 333 | 338 | KRKRRR |
2 | 334 | 338 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G078800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414498.1 | 0.0 | protein tesmin/TSO1-like CXC 3 isoform X7 | ||||
TrEMBL | A0A251PX08 | 0.0 | A0A251PX08_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251PY97 | 0.0 | A0A251PY97_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17894 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 7e-61 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G078800.2.p |