PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G078800.11.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 836aa    MW: 92102.9 Da    PI: 7.4487
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G078800.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.43.8e-15562600341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +k+CnC++skClk+YCeCfaag++C ++C C +C Nk e
  Prupe.3G078800.11.p 562 CKRCNCRRSKCLKLYCECFAAGVYCVDSCACVNCYNKPE 600
                          89**********************************975 PP
2TCR52.11.3e-16648686139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkkskClk+YCeCf+a++ Cs+ C+Ce+CkN+
  Prupe.3G078800.11.p 648 RHKRGCNCKKSKCLKRYCECFQAKVGCSSACRCEGCKNT 686
                          589***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-15560601IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.241561688IPR005172CRC domain
PfamPF036382.5E-11563598IPR005172CRC domain
SMARTSM011141.2E-16648689IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-12650686IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MKNTWRRERE IASTRKGRGS EVAYGAFFPL GWLFKKRGKQ PLPILRLDKM DRTPEANRIA  60
ATKSSSISSS PAVQESPFSN FLSNLSPLNT ATTASYTQTL LGTNLPTPPV VFTSPHINLQ  120
RETSFLERDD IVEAGSEVYK ECNTNIVQIQ NPSFEEVQLC SPSGCVDEYL ADPVEVDSTW  180
SADLRSQRTN EVPRLLHSGF APGEESNTEV CDIMFGSPEN EAVLLSDQAE KNLPLSSLEM  240
SQAAINQRDG KKTEELSRFI FEKVKESDVN ACLVSRAQNC GENAAKVNLH RAGCQYDEKN  300
ASSQSREDSN ECKQRVQKGF VKEGGQNERG IRRHLQFEAA KAYKFTILGN SESPNSLTHD  360
ATNSRSPSIL TNLKSLASSH FDNRASSSLQ DVSCDTLQFP SSPYESFTSA QIGVNSTTSA  420
PIHSVIGLHL NRISRSTSLS SDIFSSKKSI GYLSMPEQML EHGSNNIATN SSSILTSAVS  480
GKIYVHVASG QQESQAVTEA NSFTFHSTDT MKPPCHSMLV DQETAPCEVG MSASQETDEV  540
EELNQLSPKR KRRRDAYMSE GCKRCNCRRS KCLKLYCECF AAGVYCVDSC ACVNCYNKPE  600
FEDTVLDIRQ QIEARNPLAF TPKVVDNAID SSPNFTEEQD LTTPSSARHK RGCNCKKSKC  660
LKRYCECFQA KVGCSSACRC EGCKNTFGVT PEPVYNRAKK WEAHPAEKLD NVKGAIACIK  720
APAFSSASSS NSAKIPQAQL PSSQLQPSGA HYDIPYDDTP EILEETSNPT KVVRASSPNQ  780
KRVSPPQSRS RLRERSPTGL RSGRKFILQA MPSFPPLTPH RNSKEGTNEI ENDDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1756369212126Protein lin-54 homolog
5fd3_B1e-1756369212126Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1548553KRKRRR
2549553RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G078800.11.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414497.10.0protein tesmin/TSO1-like CXC 3 isoform X6
TrEMBLA0A251PX030.0A0A251PX03_PRUPE; Uncharacterized protein
STRINGEMJ178940.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.18e-60TESMIN/TSO1-like CXC 2