PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G078800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CPP | ||||||||
Protein Properties | Length: 864aa MW: 95181.4 Da PI: 7.461 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.4 | 4e-15 | 562 | 600 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC++skClk+YCeCfaag++C ++C C +C Nk e Prupe.3G078800.1.p 562 CKRCNCRRSKCLKLYCECFAAGVYCVDSCACVNCYNKPE 600 89**********************************975 PP | |||||||
2 | TCR | 52.1 | 1.3e-16 | 648 | 686 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClk+YCeCf+a++ Cs+ C+Ce+CkN+ Prupe.3G078800.1.p 648 RHKRGCNCKKSKCLKRYCECFQAKVGCSSACRCEGCKNT 686 589***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.0E-15 | 560 | 601 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.241 | 561 | 688 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.6E-11 | 563 | 598 | IPR005172 | CRC domain |
SMART | SM01114 | 1.2E-16 | 648 | 689 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.1E-12 | 650 | 686 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 864 aa Download sequence Send to blast |
MKNTWRRERE IASTRKGRGS EVAYGAFFPL GWLFKKRGKQ PLPILRLDKM DRTPEANRIA 60 ATKSSSISSS PAVQESPFSN FLSNLSPLNT ATTASYTQTL LGTNLPTPPV VFTSPHINLQ 120 RETSFLERDD IVEAGSEVYK ECNTNIVQIQ NPSFEEVQLC SPSGCVDEYL ADPVEVDSTW 180 SADLRSQRTN EVPRLLHSGF APGEESNTEV CDIMFGSPEN EAVLLSDQAE KNLPLSSLEM 240 SQAAINQRDG KKTEELSRFI FEKVKESDVN ACLVSRAQNC GENAAKVNLH RAGCQYDEKN 300 ASSQSREDSN ECKQRVQKGF VKEGGQNERG IRRHLQFEAA KAYKFTILGN SESPNSLTHD 360 ATNSRSPSIL TNLKSLASSH FDNRASSSLQ DVSCDTLQFP SSPYESFTSA QIGVNSTTSA 420 PIHSVIGLHL NRISRSTSLS SDIFSSKKSI GYLSMPEQML EHGSNNIATN SSSILTSAVS 480 GKIYVHVASG QQESQAVTEA NSFTFHSTDT MKPPCHSMLV DQETAPCEVG MSASQETDEV 540 EELNQLSPKR KRRRDAYMSE GCKRCNCRRS KCLKLYCECF AAGVYCVDSC ACVNCYNKPE 600 FEDTVLDIRQ QIEARNPLAF TPKVVDNAID SSPNFTEEQD LTTPSSARHK RGCNCKKSKC 660 LKRYCECFQA KVGCSSACRC EGCKNTFGVT PEPVYNRAKK WEAHPAEKLD NVKGAIACIK 720 APGIIHYSPT WEGISDISKL TPLSHPCSRT AFSSASSSNS AKIPQAQLPS SQLQPSGAHY 780 DIPYDDTPEI LEETSNPTKV VRASSPNQKR VSPPQSRSRL RERSPTGLRS GRKFILQAMP 840 SFPPLTPHRN SKEGTNEIEN DDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-17 | 563 | 692 | 12 | 126 | Protein lin-54 homolog |
5fd3_B | 2e-17 | 563 | 692 | 12 | 126 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 548 | 553 | KRKRRR |
2 | 549 | 553 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G078800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414495.1 | 0.0 | protein tesmin/TSO1-like CXC 3 isoform X4 | ||||
TrEMBL | A0A251Q075 | 0.0 | A0A251Q075_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17894 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14277 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-59 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G078800.1.p |