PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G060700.1.p | ||||||||
Common Name | PRUPE_ppa001405mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 838aa MW: 91800.5 Da PI: 6.4672 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 16 | 74 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Prupe.3G060700.1.p 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP | |||||||
2 | START | 168.4 | 4.9e-53 | 160 | 368 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d + W ++++++++l+v+ ++ g+ Prupe.3G060700.1.p 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDLPSWLRDCRAVDVLNVLPTAngGT 249 7899******************************************************.**************************9999** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l +++l+a+++l+p df+ +Ry+ l++g++vi+ +S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++ Prupe.3G060700.1.p 250 IELLYMQLYAPTTLAPaCDFWLLRYTSVLEDGSLVICVRSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPCSV 340 ***********************************************9998899************************************* PP HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqce 205 +++lr+l++s+++ ++k+++a+l+++++ Prupe.3G060700.1.p 341 PEVLRPLYESSAVLAQKMTMAALRQLRQ 368 ************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.548 | 11 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 13 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.42E-17 | 15 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.29E-17 | 16 | 76 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 17 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 18 | 74 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.14E-6 | 68 | 107 | No hit | No description |
PROSITE profile | PS50848 | 22.594 | 150 | 378 | IPR002913 | START domain |
CDD | cd08875 | 1.48E-75 | 154 | 370 | No hit | No description |
SuperFamily | SSF55961 | 7.55E-35 | 159 | 370 | No hit | No description |
SMART | SM00234 | 5.7E-40 | 159 | 369 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-19 | 159 | 365 | IPR023393 | START-like domain |
Pfam | PF01852 | 1.7E-50 | 160 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 7.6E-52 | 694 | 836 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0048263 | Biological Process | determination of dorsal identity | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MAMSCKDGKG GLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ 60 IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSHLV YENGYFRQHT 120 QGTTLATKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDLPSWL RDCRAVDVLN 240 VLPTANGGTI ELLYMQLYAP TTLAPACDFW LLRYTSVLED GSLVICVRSL KNTQNGPTMP 300 PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHMDLEPCSV PEVLRPLYES SAVLAQKMTM 360 AALRQLRQIA HEVSQSNVTG WGRRPAALRA LSQRLSRGFN EALNGFTDEG WSMMGNDGMD 420 DVTILINSSP DKLMGLNLSF ANGFPAVSNS VLCAKASMLL QNVPPAILLR FLREHRSEWA 480 DNNIDAYSAA AVKVGPCSLA GSRVGSFGGQ VILPLAHTIE HEEFLEVIKL EGVGHSPEDA 540 MMPREMFLLQ LCSGMDENAV GSCAELIFAP IDASFADDAP LLPSGFRIIP LDYGKEASSP 600 NRTLDLASAL EIGPTGNKAS SEFSANTGCV RSVMTIAFEF ACESHMQEHV ASMARQYVRS 660 IISSVQRVAL ALSPSHLSSH AGLRSPLGTP EAQTLARWIC NSYRCYLGVE LLKSSTEGGE 720 SILKSLWHHS DAIMCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDDHGRKTLC 780 SEFPQIMQQG FACLQGGICL SSMGRPVSYE RAVAWKVLNE EETAHCMCFL FVNWSFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00200 | DAP | Transfer from AT1G52150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G060700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ000553 | 0.0 | KJ000553.1 Prunus persica homeobox protein 15 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007214960.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | M5WR53 | 0.0 | M5WR53_PRUPE; Homeobox protein 15 | ||||
STRING | EMJ16159 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G060700.1.p |
Entrez Gene | 18783250 |
Publications ? help Back to Top | |||
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