PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G048600.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 587aa    MW: 63128.8 Da    PI: 8.9784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G048600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-0594116123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++C+k F r  nL+ H r H
  Prupe.3G048600.3.p  94 FICEICNKGFQRDQNLQLHRRGH 116
                         89*******************88 PP
2zf-C2H212.50.00045170192123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H +t+
  Prupe.3G048600.3.p 170 WKCDKCSKRYAVQSDWKAHSKTC 192
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-593116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.7E-793116No hitNo description
PROSITE profilePS5015710.84594116IPR007087Zinc finger, C2H2
SMARTSM003550.02294116IPR015880Zinc finger, C2H2-like
PfamPF121717.2E-594116IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM00355240135165IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4158191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.7E-7165190No hitNo description
SMARTSM00355140170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MMKGLMFQQQ QQQQHSQLVD ENMSNLTSAS GETASVSSGN RNEIGTSFSQ QFFAPPPSQT  60
QPALKKKRNL PGNPDPEAEV IALSPKTLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRTSKEV RKKVYVCPEA SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA  180
VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIA TGNNNPLLIS  240
PQQQQLQQPG SSSASHHHHM NLNQVQLAHQ FQDLHGFSLK KEQQSFTSLR PDLPPWLACP  300
GPPNNTSIDL SSSSSIFSPR LDQNFTQTHQ DLSLHDHNST APNPNPNPNP SLGPTLPPFQ  360
PAPSPHMSAT ALLQKAAQMG ATMSSKNSTA SAAAATSAGS SPQPMMRSHQ NNHGHVPDFG  420
GHVSSFGNNT AAAATTGAGG ASASSNNGTG PPASSSGIHQ NQNQNQNQNQ HQASLLRDMM  480
NSLSSGTGFE GASFELDAFG SMPTVLNNSK KDTNNSNNPS SAHFNRSSAS DEGGGHGEGL  540
TRDFLGLRAL SHSDILNIAG LGSCVTSAAT AGASSSLDQT HKPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35166235372Zinc finger protein JACKDAW
5b3h_F2e-35166235372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120132KLKQRTSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G048600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651831e-153AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416207.10.0protein indeterminate-domain 7
RefseqXP_020416208.10.0protein indeterminate-domain 7
RefseqXP_020416209.10.0protein indeterminate-domain 7
RefseqXP_020416210.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-126IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A251PVD50.0A0A251PVD5_PRUPE; Uncharacterized protein
STRINGXP_008228284.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-121indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]