PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G046700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GeBP | ||||||||
Protein Properties | Length: 670aa MW: 73850.5 Da PI: 6.3113 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 114.8 | 5.1e-36 | 170 | 264 | 1 | 98 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 klfqr+ws++Dei++L+G+id+ +k+g++p++d+ af++f+kks++++v+k+ql +Kirr+KkK++++v+k gk+ + k+h+qk f+l Prupe.3G046700.1.p 170 KLFQRIWSDDDEITILKGMIDYSTKKGADPYSDMGAFHDFIKKSLKADVNKTQLQDKIRRIKKKYETNVAK---GKKYNPVKPHEQKLFDL 257 579********************************************************************...999999*********** PP DUF573 92 skkiWgs 98 skk+Wgs Prupe.3G046700.1.p 258 SKKVWGS 264 *****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.6E-33 | 172 | 263 | IPR007592 | Protein of unknown function DUF573 |
PROSITE profile | PS50893 | 14.933 | 438 | 660 | IPR003439 | ABC transporter-like |
Gene3D | G3DSA:3.40.50.300 | 1.1E-30 | 461 | 639 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52540 | 5.73E-30 | 463 | 634 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00005 | 1.0E-17 | 463 | 588 | IPR003439 | ABC transporter-like |
SMART | SM00382 | 4.5E-8 | 469 | 637 | IPR003593 | AAA+ ATPase domain |
PROSITE pattern | PS00211 | 0 | 560 | 574 | IPR017871 | ABC transporter, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0016887 | Molecular Function | ATPase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MAPKRPSPLD EPPAASSSEE EVASSEEEVD GEEEEESGSG SESESEEPEP PKAAPTPVAA 60 KKPDSATVNS KPQSSSSGSE SESESDSELD KDRVVKPIVS KPMEETPKTK KPRSKASAIT 120 TPAARAGLKR PSESDPKDSK RPKKKVTDPD QEREHAGEET KKAGGDDSKK LFQRIWSDDD 180 EITILKGMID YSTKKGADPY SDMGAFHDFI KKSLKADVNK TQLQDKIRRI KKKYETNVAK 240 GKKYNPVKPH EQKLFDLSKK VWGSGEGSIG LSGLSEQSKS NGKARTNQKG NKTLASLKAE 300 LLSSPERPKE CEKVEFGLKP CGSESLSEVI GFDKGFRELG LPEGVVKQGL ELIGGAKRAE 360 LKEKWKKLHV AELELFVKKS ELMRDQAKPG AFGVVTLPFS VREGINIFLS GFVPTENPRF 420 RDESLTFKVT ETPQESGEEI ETYARYGYPS MTKTLGEFKL QVIEGEFTNS QIIVMLGENG 480 SGKTTFMRML VGLSKPDSGV EIPELHVSYK NQKINPKRAT KVKDLLHEKI RDSCTHPQFV 540 TDVMKPLQIE QLMDQEITKL SGGELQRVAL CVCLGKPADI YLMDEPSAYL DSEQRIVAAK 600 VIKRFVLHAK KTAFVVGHDF IIATYLADKV IVYEGKSSVD CIANSPNQQI ESTNDTEQKA 660 SGSYYYLDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lzv_jj | 1e-128 | 389 | 669 | 104 | 599 | ABCE1 |
6hcf_k1 | 1e-128 | 389 | 669 | 104 | 599 | ATP binding cassette subfamily E member 1 |
6hcm_k1 | 1e-128 | 389 | 669 | 104 | 599 | ATP binding cassette subfamily E member 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.5793 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G046700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007214850.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | A0A251PVI7 | 0.0 | A0A251PVI7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16049 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 2e-27 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G046700.1.p |