PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G043900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 367aa    MW: 40620.4 Da    PI: 9.051
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G043900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.39e-32208264158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         dep+YVNaKQy++Il+RRq Rakle+++kl  k rkpylheSRh hAl+R+RgsgGrF
  Prupe.3G043900.1.p 208 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-VKIRKPYLHESRHVHALKRARGSGGRF 264
                         79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.8E-36206267IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.126207267IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.4E-26209264IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.9E-23210232IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860212232IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.9E-23241264IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MLALSQFAFL VADEWTIEVK VQTMQNLYKQ NSDIGSAHST FPFIVGSSSW EYSTDTHVQQ  60
STSKSLIFRM GAPLQNCHNR KQSGIHFQDQ DSSSTQSTGQ SHSEVDSMKE GNPCGEGIVS  120
AQSGYNERQG KPVGGHLKSL SSMASQGFVF PSQLDFSHPM GHIPFHYAEP YFGSLLAAAC  180
GPQATIHHPQ VMGITPARVP LPLDLTEDEP IYVNAKQYRA ILRRRQYRAK LEAQNKLVKI  240
RKPYLHESRH VHALKRARGS GGRFLNMKKV QDSKPNTTNR VDVSGSAQLH LTRNMSESEV  300
LEPDNYRDGA STTSCSEVTS TSNSDNIFPR QDFRFSGYPS HIGGTMQVPF VDVRGGGNQH  360
HISLLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19208268262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G043900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020416230.10.0nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_020416231.10.0nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_020416232.10.0nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_020416233.10.0nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_020416234.10.0nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A251PWE60.0A0A251PWE6_PRUPE; Uncharacterized protein
STRINGXP_008228224.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-63nuclear factor Y, subunit A3