PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G042900.6.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 542aa    MW: 59511.3 Da    PI: 9.0332
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G042900.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08428476348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
  Prupe.3G042900.6.p 428 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 476
                         7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.869421480IPR017930Myb domain
SuperFamilySSF466899.36E-16423487IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-12423482IPR009057Homeodomain-like
SMARTSM007171.2E-8425478IPR001005SANT/Myb domain
CDDcd116608.50E-20427477No hitNo description
PfamPF002493.1E-6428476IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MLQKVKQEEK LRLACGSPDH SSAFMNVDSQ CTDQHDKLPA IDKKLQSEIP LQEIVPSSDL  60
SLDDSHINES ARIGECSKPP DGPIESGSPA SVICNSSKPD FYTLKGEICL DNLSIRELHG  120
LFRATFGRET TVKDKLWLKR RIAMGLTNSC DVSTTTFTII DNKLVNKGTD NSFQNADGML  180
TEGSDGEAKN LGYETSPTSH SSQMENHQIV LGKRLGNLSV ELDCGSDDLQ MEHRGAKRVR  240
KPTKRYIEEL SEVESRDYTP KVISSAKNTG QGQTSPKYCI RPPGNAPLNE RTIVTRLDSL  300
GGSGVQVPFV SRVRRSRPRK NIMALMKFDS SGMGVAAKLV QEALSVHSSP PESEHADKDS  360
KVRSASEQIQ PQFAAEPEKD KRRSVMSTIE LGKNLGLKQT DSSEDNSDDG IATVPTAKGG  420
MRRKHHRAWT LVEVIKLVEG VSKCGTGRWS EIKRLSFASY SYRTSVDLKD KWRNLLKASF  480
AQTPPDDGIN SRKHASVPIP AAILLKVREL AEMHAQVPPN LGPGKLPSVS RSVHQTRSGY  540
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313319RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G042900.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414507.10.0uncharacterized protein LOC18783461 isoform X1
TrEMBLA0A251PV340.0A0A251PV34_PRUPE; Uncharacterized protein
STRINGXP_008228212.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-106TRF-like 6