PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G042900.4.p | ||||||||
Common Name | PRUPE_ppa003052mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 609aa MW: 66356.4 Da PI: 6.411 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 495 | 543 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G+g+W+ I r Rt ++k++w+++l Prupe.3G042900.4.p 495 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 543 7**************************99999*99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.869 | 488 | 547 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-12 | 490 | 549 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.14E-15 | 490 | 554 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-8 | 492 | 545 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.23E-19 | 494 | 544 | No hit | No description |
Pfam | PF00249 | 3.6E-6 | 495 | 543 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
METVVGVEGS DEGKCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDEVME 60 VEEFLVDEKI ELPVVTDAGN VECISNEESS SGKSHKESSE GLSHSENTEP DAKLSARLEE 120 IVPSSDLSLD DSHINESARI GECSKPPDGP IESGSPASVI CNSSKPDFYT LKGEICLDNL 180 SIRELHGLFR ATFGRETTVK DKLWLKRRIA MGLTNSCDVS TTTFTIIDNK LVNKGTDNSF 240 QNADGMLTEG SDGEAKNLGY ETSPTSHSSQ MENHQIVLGK RLGNLSVELD CGSDDLQMEH 300 RGAKRVRKPT KRYIEELSEV ESRDYTPKVI SSAKNTGQGQ TSPKYCIRPP GNAPLNERTI 360 VTRLDSLGGS GVQVPFVSRV RRSRPRKNIM ALMKFDSSGM GVAAKLVQEA LSVHSSPPES 420 EHADKDSKVR SASEQIQPQF AAEPEKDKRR SVMSTIELGK NLGLKQTDSS EDNSDDGIAT 480 VPTAKGGMRR KHHRAWTLVE VIKLVEGVSK CGTGRWSEIK RLSFASYSYR TSVDLKDKWR 540 NLLKASFAQT PPDDGINSRK HASVPIPAAI LLKVRELAEM HAQVPPNLGP GKLPSVSRSV 600 HQTRSGYL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 380 | 386 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G042900.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007217148.1 | 0.0 | uncharacterized protein LOC18783461 isoform X2 | ||||
TrEMBL | M5WX22 | 0.0 | M5WX22_PRUPE; Uncharacterized protein | ||||
STRING | EMJ18347 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-101 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G042900.4.p |
Entrez Gene | 18783461 |