PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G042900.3.p
Common NamePRUPE_ppa003052mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 615aa    MW: 67153.4 Da    PI: 6.41
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G042900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08501549348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
  Prupe.3G042900.3.p 501 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 549
                         7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.869494553IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-12496555IPR009057Homeodomain-like
SuperFamilySSF466891.22E-15496560IPR009057Homeodomain-like
SMARTSM007171.2E-8498551IPR001005SANT/Myb domain
CDDcd116601.25E-19500550No hitNo description
PfamPF002493.6E-6501549IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
METVVGVEGS DEGKCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDEVME  60
VEEFLVDEKI ELPVVTDAGN VECISNEESS SGKSHKESSE DSQCTDQHDK LPAIDKKLQS  120
EIPLQEIVPS SDLSLDDSHI NESARIGECS KPPDGPIESG SPASVICNSS KPDFYTLKGE  180
ICLDNLSIRE LHGLFRATFG RETTVKDKLW LKRRIAMGLT NSCDVSTTTF TIIDNKLVNK  240
GTDNSFQNAD GMLTEGSDGE AKNLGYETSP TSHSSQMENH QIVLGKRLGN LSVELDCGSD  300
DLQMEHRGAK RVRKPTKRYI EELSEVESRD YTPKVISSAK NTGQGQTSPK YCIRPPGNAP  360
LNERTIVTRL DSLGGSGVQV PFVSRVRRSR PRKNIMALMK FDSSGMGVAA KLVQEALSVH  420
SSPPESEHAD KDSKVRSASE QIQPQFAAEP EKDKRRSVMS TIELGKNLGL KQTDSSEDNS  480
DDGIATVPTA KGGMRRKHHR AWTLVEVIKL VEGVSKCGTG RWSEIKRLSF ASYSYRTSVD  540
LKDKWRNLLK ASFAQTPPDD GINSRKHASV PIPAAILLKV RELAEMHAQV PPNLGPGKLP  600
SVSRSVHQTR SGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386392RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G042900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414507.10.0uncharacterized protein LOC18783461 isoform X1
TrEMBLA0A251PV160.0A0A251PV16_PRUPE; Uncharacterized protein
STRINGXP_008228212.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-100TRF-like 6