PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G040400.1.p | ||||||||
Common Name | PRUPE_ppa022653mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 549aa MW: 61096.3 Da PI: 6.4099 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 261.9 | 2.1e-80 | 157 | 538 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL cA a++ g+l+++q+lL l+elas +gd+++Rlaa+ ++AL ++l++s+++ +++ pp + ++++ ++l f+evsP++ Prupe.3G040400.1.p 157 EQLLNPCALAITGGNLTRVQHLLYVLHELASLTGDANHRLAAHGLRALTQHLSSSGPNGSASAPPVTFASTEPRFFQKSLLKFYEVSPWFA 247 689******************************************************************8888888888888********* PP GRAS 93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...........skeeleetgerLak 167 f + +aN+ Il+ +++e + +Hi+D ++s+G+QWp+Ll+aL+ Rp ++pp ++iT+v++++++ + L Prupe.3G040400.1.p 248 FPNNIANSSILQLFAEEsdrtRNLHIVDVGVSHGMQWPTLLEALTRRPgGPPPLVKITVVSAAANTennqnretpfsIGPPGDNFSFSLLG 338 **************9998887889************************55566********99888666655544433344455666799* PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFle 255 fA+++++++++n l + l++l+ + ++++++E+l+V+++++lh+l +++++er+e+Lk++++++Pk v+++e+++++ n ++F++ Prupe.3G040400.1.p 339 FAKSMNINLQINRLDNQPLQNLNAQVIDTSNDEMLIVCVQFRLHNLN---HNTPDERTEFLKALRNMEPKGVILSENNMECscnNCGDFAT 426 *************9999*****************************8...77777889*******************9665446778**** PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345 +f++ +ey + ++ds+++ + + r + Er++++ e+ ++++++g++ +e +ekW er++ +GF ++e+a + ++llrk++ Prupe.3G040400.1.p 427 GFSRQVEYLWRFLDSTSSAF----KGRESDERRVMEGEAAKALTNRGEM----NEGKEKWCERMRGVGFVGQVFGEDAIDGGRALLRKYDs 509 ****************6665....5555556666666699999999998....9************************************9 PP GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++rv+e++g++ l Wk++p+ ++S W+ Prupe.3G040400.1.p 510 NWEMRVDEKDGCAGLWWKGQPVSFCSLWK 538 999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.475 | 130 | 517 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.4E-78 | 157 | 538 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MTTQEPEPNS TSDHILDWLE DSVTFFPTFL DNPYHSNDIN GLQWWDESHD LIHSNTTSTS 60 LNNPISIALP TTTRPQNPTN LNHQSPSDSS KKRKVSDDQH IDQKNHVRPI SLAGQGDQLV 120 DEVVVPVKRT NGNRKGTAKT TGNNCNNGNS KEGRWAEQLL NPCALAITGG NLTRVQHLLY 180 VLHELASLTG DANHRLAAHG LRALTQHLSS SGPNGSASAP PVTFASTEPR FFQKSLLKFY 240 EVSPWFAFPN NIANSSILQL FAEESDRTRN LHIVDVGVSH GMQWPTLLEA LTRRPGGPPP 300 LVKITVVSAA ANTENNQNRE TPFSIGPPGD NFSFSLLGFA KSMNINLQIN RLDNQPLQNL 360 NAQVIDTSND EMLIVCVQFR LHNLNHNTPD ERTEFLKALR NMEPKGVILS ENNMECSCNN 420 CGDFATGFSR QVEYLWRFLD STSSAFKGRE SDERRVMEGE AAKALTNRGE MNEGKEKWCE 480 RMRGVGFVGQ VFGEDAIDGG RALLRKYDSN WEMRVDEKDG CAGLWWKGQP VSFCSLWKTD 540 VKVMVTKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 3e-37 | 150 | 538 | 81 | 473 | Protein SHORT-ROOT |
5b3h_B | 1e-37 | 150 | 538 | 27 | 419 | Protein SHORT-ROOT |
5b3h_E | 1e-37 | 150 | 538 | 27 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G040400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020416376.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | M5X941 | 0.0 | M5X941_PRUPE; Uncharacterized protein | ||||
STRING | EMJ18028 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-169 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G040400.1.p |
Entrez Gene | 18782192 |
Publications ? help Back to Top | |||
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