PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G029400.2.p | ||||||||
Common Name | PRUPE_ppa000565mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HB-other | ||||||||
Protein Properties | Length: 1133aa MW: 127774 Da PI: 7.14 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.1 | 1.1e-11 | 8 | 58 | 7 | 57 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++qle+Le+++ ++ryps++++e A+ +Lt +qV+ WF +R +ek+ Prupe.3G029400.2.p 8 KTQSQLEALESFYSEDRYPSRTAMECHAAAFRLTYKQVRGWFVEKRRREKR 58 699**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 6.4E-6 | 2 | 63 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-10 | 5 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 7 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.31E-8 | 7 | 60 | No hit | No description |
Pfam | PF00046 | 4.7E-9 | 8 | 58 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.6 | 9 | 59 | IPR001356 | Homeobox domain |
SMART | SM00571 | 2.4E-7 | 358 | 417 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 11.834 | 358 | 417 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.4E-9 | 361 | 413 | IPR018501 | DDT domain |
Pfam | PF15612 | 1.2E-5 | 639 | 678 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 2.0E-11 | 771 | 844 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1133 aa Download sequence Send to blast |
MMEKIKRKTQ SQLEALESFY SEDRYPSRTA MECHAAAFRL TYKQVRGWFV EKRRREKREN 60 KTTEELGGRN GSGAGAPRVV KHCPSKAPSL LRYKQTKMNG NHIQELLTPD YILKKVFRKD 120 GPPLGVEFDS LPSRALFHST DPEDLHPPCK ENQRETKRRK VTEHAVIGHQ NCDESAPVKK 180 HGVGKGLMTV WRATNPDARD FPVDMGFANG GVTSVSLIPT PVSRKPVTQN RRLQQKKCVP 240 KQGRVRNKVQ EKRKHFVKRR EVESNNENQT LPSKEKCELA LEGAGSQEHS DKIAMLVDDE 300 ELELRELQGR PNALGCSDHF TTNGDHACSL CKDLLAKFPP NSVKMKQPFC MQPWDSSPEI 360 VKKLFKVFHF LCTYAVMVDI SSFTIDEFAQ AFQDKDSLLL GKIHVALLKL LLSNVEAELG 420 CGSIPHLSKS CNFLAFIHSV ENQESTLEFW KRSLNPLTWT EILRQVLVAA GFGSKQGAMR 480 RDALSKEMSL MVKYGLRPGT LKGELFRVLL EQGIHGLKVS ELAKSLQISE LNLSSGIEEL 540 ESLIGSTLSS DITLFEKISS STYRVRINSS EKEVEESQSD TEDSGAVDDD LGDSGTCSSD 600 DDSGCNSGNS QIKKLTYMNH GKSKDNMVTV YTEIDESHPG EVWLLGLMEG EYSDLSIEER 660 LSAIVALIDL LHAGSSFRME DPINAIAECV PSSLHSGSGA KIKRLSTKQH GMPRPTWVHA 720 GHTSGAKEDY TLKFHPIDSS GSISKFSDER FSRKEKNGKE REMRFDIHPM QSVFLGSDRR 780 YNRYWLFLGP CNAYDPGHRR VYFESSEDGH WEVIDTEEAL CALLSVLDDR GKREALLIES 840 LEKRIAFLCQ AMSSRMVNSD RIDNLAQSDQ SELDSVREDT YSPVSDVDNN LSGIANDSLP 900 SSGVVVLEVR KKGEQQKQKW SRIQAFDSWL WNSFYLDLNA VKHGKRSYFD TLTRCESCHD 960 LYWRDEKHCR ICHTTFELHF DLEERYAIHV ATCKEKEASD TFPKHKVLSS QIQSLKAAMH 1020 AIESVMPEDA LLGAWKKSAH KLWVKRLRRT SSLAELLQVL GDFVGAINED RLYECNAVQG 1080 SCNFSEELIA SFACMPQTTS AVALWLVRLD ALLAPYLERA HSQKRLEISV RD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.8467 | 1e-106 | shoot |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G029400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM465585 | 7e-44 | AM465585.2 Vitis vinifera contig VV78X239647.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020415376.1 | 0.0 | homeobox-DDT domain protein RLT3 isoform X2 | ||||
Swissprot | F4JRF5 | 0.0 | RLT3_ARATH; Homeobox-DDT domain protein RLT3 | ||||
TrEMBL | A0A251PXJ6 | 0.0 | A0A251PXJ6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16108 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G029400.2.p |
Entrez Gene | 18783218 |