PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G021400.1.p | ||||||||
Common Name | PRUPE_ppa016025mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 166aa MW: 18759.2 Da PI: 8.7783 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.5 | 1.9e-22 | 48 | 134 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+e+GFsvr +skks ++ge++++++vC+keg+ ++e++ +r r + r +Cka+l v k+k g ++vt +e+ H+H+++ Prupe.3G021400.1.p 48 DFYNQYAREAGFSVRSYSSKKS-KDGEVIRKEYVCNKEGSWSTETSG--VVKRCRGVGRESCKARLIVVKSKYGGYVVTIFEEAHTHPMT 134 6*****************9999.8889***************99988..8889999*******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-19 | 48 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEANNGILVH METDSETNPS VSIFYPQVIG ELTPFQGQQF ETLEEVYDFY NQYAREAGFS 60 VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSGVVKRCRG VGRESCKARL IVVKSKYGGY 120 VVTIFEEAHT HPMTTPRRRH LLKSHRRISG VDQLVAQQLI SVNAF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G021400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216198.1 | 1e-121 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | M5WUA3 | 1e-120 | M5WUA3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17397 | 1e-121 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14110 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-20 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G021400.1.p |
Entrez Gene | 18781763 |