PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G019800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 288aa    MW: 31477 Da    PI: 6.2824
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G019800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-15220256135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg  +  Tp++Rrgpdg++tLCnaCGl+++ kg+
  Prupe.3G019800.1.p 220 CRHCGINEkcTPMMRRGPDGPRTLCNACGLMWANKGT 256
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.50476111IPR010399Tify domain
SMARTSM009791.5E-1176111IPR010399Tify domain
PfamPF062003.6E-1279110IPR010399Tify domain
PfamPF062032.5E-15144186IPR010402CCT domain
PROSITE profilePS5101713.225144186IPR010402CCT domain
PROSITE profilePS501148.655214270IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-13214267IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-12215264No hitNo description
CDDcd002022.36E-14219262No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14219261IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.8E-13220256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDDICGSDEP MHMNDNLHLQ YMQDHEHHHG LDQISNVDGV ADDHENGNGG AELVQADVPS  60
DPMNLSDTRD GMMDHGPENG DQLTLSFQGQ VFVFDSVSPE KVQAVLLLLG GREVPPSMPA  120
VPVTTQHNNQ GLTSTPQRLS VPQRLASLIR FREKRKERNF DKKIRYTVRK EVALRMQRKK  180
GQFTSSKPNN DDSASAVTSS GSNESWSQDG NGSQHQEAVC RHCGINEKCT PMMRRGPDGP  240
RTLCNACGLM WANKGTLRDL SKAAAAAAPQ AGQNPSVSKN EDIKPDL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G019800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020414311.10.0GATA transcription factor 24 isoform X1
SwissprotQ8H1G01e-119GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A251PTT00.0A0A251PTT0_PRUPE; Uncharacterized protein
STRINGXP_008227952.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-122ZIM-like 1