PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G009400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23101.2 Da PI: 10.3669 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.1e-21 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Prupe.3G009400.1.p 16 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 65 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.63E-31 | 15 | 75 | No hit | No description |
PROSITE profile | PS51032 | 23.143 | 16 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-38 | 16 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-23 | 16 | 74 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 16 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 17 | 28 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-14 | 17 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 39 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00783 | 6.1E-13 | 146 | 168 | IPR000425 | Major intrinsic protein |
SuperFamily | SSF81338 | 5.63E-17 | 152 | 207 | IPR023271 | Aquaporin-like |
Gene3D | G3DSA:1.20.1080.10 | 6.3E-20 | 153 | 208 | IPR023271 | Aquaporin-like |
Pfam | PF00230 | 1.3E-17 | 153 | 203 | IPR000425 | Major intrinsic protein |
PRINTS | PR00783 | 6.1E-13 | 186 | 206 | IPR000425 | Major intrinsic protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005215 | Molecular Function | transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKQVFSSGSP PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA 60 YKLRGDFARL NFPHLRHNGS SVGGDFGEYK PLHSVDAKLQ AICEGLAETQ KQGKAAGKPS 120 KRSSAARAPA PPPEVKVETS SSPVMTDSDG SAGLATIPIT GTGINPARSF GPAVIFNNEK 180 AWDDQWIFWV GPFVGALAAA AYHQYILRAA GQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1z98_A | 5e-28 | 154 | 210 | 211 | 267 | aquaporin |
1z98_M | 5e-28 | 154 | 210 | 211 | 267 | aquaporin |
2b5f_A | 5e-28 | 154 | 210 | 211 | 267 | aquaporin |
2b5f_B | 5e-28 | 154 | 210 | 211 | 267 | aquaporin |
2b5f_C | 5e-28 | 154 | 210 | 211 | 267 | aquaporin |
2b5f_D | 5e-28 | 154 | 210 | 211 | 267 | aquaporin |
4ia4_A | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4ia4_B | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4ia4_C | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4ia4_D | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4jc6_A | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4jc6_B | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4jc6_C | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4jc6_D | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4jc6_H | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4jc6_J | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4jc6_L | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
4jc6_N | 5e-28 | 154 | 210 | 211 | 267 | Aquaporin |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.6278 | 5e-94 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G009400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369556 | 0.0 | KT369556.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414393.1 | 1e-157 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 8e-69 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A251PT82 | 1e-155 | A0A251PT82_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22730 | 1e-107 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 7e-55 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G009400.1.p |
Publications ? help Back to Top | |||
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