PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G006800.2.p
Common NamePRUPE_ppa005762mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 410aa    MW: 46298.1 Da    PI: 9.5918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G006800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.8e-07130171446
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         WT+eE ++l d ++++  + +  Ia +++  Rt +++k+r+++
  Prupe.3G006800.2.p 130 WTKEETDQLFDMCQRFDLR-FIVIADRFPSSRTVEELKDRYYS 171
                         *******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162821.5E-30102176IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007176.3E-7126175IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-6127177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-5130173IPR009057Homeodomain-like
CDDcd116586.21E-19130172No hitNo description
PfamPF054992.8E-7319381IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDAKDILGLP KTAHPLSQEK KSRPPKESQR KPDGISREVY ALIGGVPPLM PAVETSQLKK  60
RPPTDEKITW QWLPFTSSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKS VEVVKYTDEE  120
YEKYLTDPIW TKEETDQLFD MCQRFDLRFI VIADRFPSSR TVEELKDRYY SVSRAILMAR  180
AASPADVSGH PIVKEPYKVA QERERKRALS MVLSQTKHQE RKDAEVLAEA KRIAEARMVA  240
RSAKELELPV TLNDGLENNE RALVPGETVS PSSNSQFPSG TVAPSTLMAE NASTLGSLKM  300
LRVYLRTYAL DQMIQAASSS AGLRTIKRVE QSLQELGVNL KPRVPTKAVC SHHLELRKEI  360
LTLLNLQKQL QYKEAEGSSY RDSPYETPGT PKVCFLPCGR PVLQTMRFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A1e-22101186493DNA methyltransferase 1-associated protein 1
4iej_A1e-22101186493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G006800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021812655.10.0SWR1-complex protein 4 isoform X3
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A251PUJ10.0A0A251PUJ1_PRUPE; Uncharacterized protein
STRINGEMJ226820.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]