PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G327900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 784aa MW: 89877.5 Da PI: 7.2363 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.8 | 2.7e-26 | 65 | 150 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +g+w+v+++++eHnHel p Prupe.2G327900.1.p 65 FYKAYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGNWYVYSFVKEHNHELLP 150 ****************************************999877....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-24 | 65 | 150 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.3E-31 | 263 | 356 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.695 | 543 | 579 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.2E-9 | 545 | 577 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.8E-7 | 554 | 581 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
MFMGPMKTFR PFASAFEGEV HGGCRVDLNF PTTLMDSNTL TLTATSTLEP HDAMEFESHE 60 AAYTFYKAYA KSVGFGTAKL SSRRSRASKE FIDAKFSCIR YGNKQQSDDA INPRPSPKIG 120 CKASMHVKRR PNGNWYVYSF VKEHNHELLP AQAHFFRSHR NTDPLNNDVR IRRRKNLAAV 180 SSLFSAYQNV DCLESYLRNQ HDKGRSLVLE AGDAQVLLEY FMCMQEENPK FFYAVDLNEE 240 HRLRNVFWVD AKGMEDYTNF NDVVFFDTTY FTNKYKIPLV LFIGVNHHIQ PTLLGCALIA 300 DETVYTFVWL MQTWFIAMGE QAPRVILTDQ NNAIKAAIAA VFPGTSHCFC LWHIMEKIHR 360 HLEFLSMWHD SFVGKFNKCI FKSWSEQQFE KRWWKLLDRF NLREVEWMQS LYEDRTHWVP 420 TFMRDISFAG LSPTSRSESL NSSFDKYIHG ETSLREFMER YRVILEDRYE EEAKSNFDAW 480 HETPELKSPS PFEKQMSLVY THEVFKNFQV EVLGAAACHL KKENEDGTST TYSVKDFEDN 540 QNYVVEWNES KSDIYCSCHS FEYKGYLCRH AIVVLQMSGV FTIPSKYILQ RWTNAAMSRH 600 AIGERLDEVQ SKVRRYNDLC RRAIILGEEG SLSQESYDVA LCAIKEALKQ CASLNNAVEN 660 NAKPNDSAIH GICGVDGENQ CSTASGDKLF GPKVSNANKT PRRAGSGKEV ARNENTASKK 720 GKVPHLEATS VGTQDGFHQM QLPDTRAMQL RNTVPSTMFQ NVASAAQFHN VASTHVHENH 780 LPQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G327900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020412519.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A251QQB1 | 0.0 | A0A251QQB1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234547.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G327900.1.p |
Publications ? help Back to Top | |||
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