PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G327700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 436aa    MW: 47959.2 Da    PI: 6.9022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G327700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-192067148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+lv+++k++G g+W++ ++  g++R++k+c++rw +yl
  Prupe.2G327700.1.p 20 KGPWTPEEDEKLVEYIKRYGHGSWRALPKLAGLNRCGKSCRLRWTNYL 67
                        79********************************************97 PP
2Myb_DNA-binding51.91.8e-1673118148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++ +++++++ G++ W++Ia+ ++ gRt++++k++w+++l
  Prupe.2G327700.1.p  73 RGNFSQEEEQTIINLHALVGNK-WSAIANNLP-GRTDNEIKNFWNTHL 118
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-251470IPR009057Homeodomain-like
PROSITE profilePS5129419.3571567IPR017930Myb domain
SuperFamilySSF466891.32E-3117114IPR009057Homeodomain-like
SMARTSM007173.0E-161969IPR001005SANT/Myb domain
PfamPF002499.3E-182067IPR001005SANT/Myb domain
CDDcd001676.45E-132267No hitNo description
PROSITE profilePS5129426.36868122IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2771122IPR009057Homeodomain-like
SMARTSM007172.2E-1672120IPR001005SANT/Myb domain
PfamPF002491.7E-1573118IPR001005SANT/Myb domain
CDDcd001674.78E-1275118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGRSASASGW CDEKSSSVKK GPWTPEEDEK LVEYIKRYGH GSWRALPKLA GLNRCGKSCR  60
LRWTNYLRPD IKRGNFSQEE EQTIINLHAL VGNKWSAIAN NLPGRTDNEI KNFWNTHLKK  120
KLLQMGIDPV TDRPITANNS DNIHNLYYLM INHILSSLAP QLLASSGTCS SLANNNLMMN  180
MNPWGADLMR LHYSDAKIQV LRNILVQQLL SSTSTPNAEA AFNYLLPSYS SSSVHDHIDH  240
EYSRVSINHY NYFPHLQGFG NGGAPIGFVP QNPTHASAQP SNLSSNISGL LKALHDLDHS  300
QPPRAPPVLV PSSGSGTGTS DKLLGYDDHA TVFSSTTGSN KICTNNNNNN NRDHSQQLQL  360
GGSSSSYATP TDQLPLLVRS AAPSPETSAA NPTVENNISN TTYSTTFEAW GNPPDLMDHD  420
DDATNHSYWK DIFME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30201227108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G327700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413057.10.0transcription factor MYB29
TrEMBLA0A251QQ380.0A0A251QQ38_PRUPE; Uncharacterized protein
STRINGXP_008234856.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2295744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-73myb domain protein 9