PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G306400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 366aa MW: 41098.9 Da PI: 4.4966 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.8e-19 | 117 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+f taeeAa +++a+ kl+g Prupe.2G306400.1.p 117 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTFETAEEAAMVYDNAAIKLRG 166 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-30 | 116 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.591 | 117 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-12 | 117 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-21 | 117 | 173 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-38 | 117 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.14E-33 | 117 | 173 | No hit | No description |
PRINTS | PR00367 | 2.5E-10 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDSSILCPIK YTEHRNTTKK LTKPRKKPTT ESTSSSIPRI VRISMTDPDA TDSSSGEEDE 60 FFGRQRVKHY VDEIIIETDF RNTLVLPNNG RKRSTVQPPA RRRTVKNSVS QTNGSRKFRG 120 VRQRPWGKWA AEIRDPARRV RLWLGTFETA EEAAMVYDNA AIKLRGPDAL TNFVSPLPKE 180 EEKPELPVEP LIEKAEPVIE SLEVEITNGT TSGSGYDSGS ESHNNLSSPT SVLHFRTQPK 240 MEEAHEPQKL QVFDQVMQEC EDETCTNFVS DDLGNYLPLD LPYLDDVFSF PAPDSPLFFD 300 TPMFFDDDAT AAAATLPECL LKEDFSDMFR DTYDTSLSPT TSSMCQGGED YFQDILFGSD 360 PLVVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 116 | 173 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-22 | 116 | 173 | 4 | 62 | ATERF1 |
3gcc_A | 5e-22 | 116 | 173 | 4 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G306400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218689.2 | 0.0 | ethylene-responsive transcription factor CRF3 | ||||
TrEMBL | A0A251QNU5 | 0.0 | A0A251QNU5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234789.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-51 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G306400.1.p |