PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G291400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 809aa MW: 88159.2 Da PI: 6.5496 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 117 | 172 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++l+L+++qVk+WFqNrR+++k Prupe.2G291400.1.p 117 KKKYHRHTPSQIQELENFFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMK 172 79999************************************************999 PP | |||||||
2 | START | 173.6 | 1.2e-54 | 327 | 548 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 la +a++elvk+a+a++p+W k s e++n +e++ + + +e r++ +v+ ++ lve+l+d + +W e++ +a++ Prupe.2G291400.1.p 327 LAMAAMDELVKMAQADSPLWIKTSdggtEILNHEEYRAFSCIGTKpsnFVTEGTRDTCMVIINSLALVETLMDAN-RWAEMFSclvaRASV 416 57799*******************99999999999987655544466679*************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 ++ issg galq+m aelq+lsplvp R f+R+++q+++g+w++vdvS+d +q+ +++ + ++++pSg+++++++n+ skvt Prupe.2G291400.1.p 417 IDMISSGmggtrnGALQVMHAELQVLSPLVPvRPLKFLRFCKQHQEGVWAVVDVSIDINQEGSSTNAFLNCRRFPSGCIVQDMPNNCSKVT 507 ******************************************************************************************* PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 w+eh +++++++h l+ +l++sg+ +ga++w+atlqrqce+ Prupe.2G291400.1.p 508 WIEHSEYDENTVHHLFWQLLRSGMGFGAQRWLATLQRQCEC 548 ***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 100 | 172 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-20 | 103 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.702 | 114 | 174 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-18 | 116 | 178 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-18 | 117 | 172 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.67E-19 | 117 | 174 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 149 | 172 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.981 | 317 | 551 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.2E-32 | 318 | 548 | No hit | No description |
CDD | cd08875 | 3.30E-113 | 321 | 547 | No hit | No description |
SMART | SM00234 | 6.7E-37 | 326 | 548 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-46 | 327 | 548 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.26E-14 | 575 | 802 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MSFGGLISGG SGNSGGGRAR VVADIAPHTP YMPSGAIAQP HFLTSPVPNS MRSSSSLSLS 60 IKNMDGHSEL GLIAENFDPG IIGRMRDDEY ESRSGSDNFE GASGDDQDAG DEQRPRKKKY 120 HRHTPSQIQE LENFFKECPH PDEKQRLELS RRLSLETKQV KFWFQNRRTQ MKTQLERHEN 180 IILRQENDKL RAENGVMKDS MANPVCNSCG GPAIPGQISF EEHHLRIENA RLKDELNRIC 240 TLANKFLGRS ISSLASPISL PNSTSGLELG VGRNGIGGLS AGGSGLPMGL NLGDGVSSSS 300 PMMPLIKSST GMLGNEVPYE RSMYIDLAMA AMDELVKMAQ ADSPLWIKTS DGGTEILNHE 360 EYRAFSCIGT KPSNFVTEGT RDTCMVIINS LALVETLMDA NRWAEMFSCL VARASVIDMI 420 SSGMGGTRNG ALQVMHAELQ VLSPLVPVRP LKFLRFCKQH QEGVWAVVDV SIDINQEGSS 480 TNAFLNCRRF PSGCIVQDMP NNCSKVTWIE HSEYDENTVH HLFWQLLRSG MGFGAQRWLA 540 TLQRQCECLA FLISSTNSIE DHTGLGTNGK KSMLKLAQRM IDNFCAGVSA SSVRKWDKLC 600 VNNVSEDLRV MARKSVDDPG EPAGIVLSGS TSVWLPVSRH RLFDFLRDEQ LRDQWDVLSK 660 THKMQLMLRI AKSQGGGNCV SLLRANVIDA NENTMLMLQE SWSDASGALV VYAPVDPASM 720 SAVMRGGDSA YVALLPSGFA ILPGGPPGYG MVKTEGNGCD DGGCFLTVGF QILGSNYPAA 780 KLDVQSINTV NTLVSHTIEK IKSALQVP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G291400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007219555.2 | 0.0 | homeobox-leucine zipper protein HDG7 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A251QN55 | 0.0 | A0A251QN55_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234278.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G291400.1.p |
Publications ? help Back to Top | |||
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